3R9J | pdb_00003r9j

4.3A resolution structure of a MinD-MinE(I24N) protein complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Cell division protein MinE topological specificity domain	8035789	3001599	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cell division protein MinE topological specificity domain	8035789	3001599	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Simibi-like P-loop NTPases	8056297	3002018	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Simibi-like P-loop NTPases	8056297	3002018	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	MinE	e3r9jD1	A: a+b duplicates or obligate multimers	X: MinE-like	H: Cell division protein MinE topological specificity domain (From Topology)	T: Cell division protein MinE topological specificity domain	F: MinE	ECOD (1.6)
C	MinE	e3r9jC1	A: a+b duplicates or obligate multimers	X: MinE-like	H: Cell division protein MinE topological specificity domain (From Topology)	T: Cell division protein MinE topological specificity domain	F: MinE	ECOD (1.6)
B	AAA_31	e3r9jB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA_31	ECOD (1.6)
A	AAA_31	e3r9jA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA_31	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D	PF03776	Septum formation topological specificity factor MinE (MinE)	Septum formation topological specificity factor MinE	-	Family
A, B	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain (CbiA)	CobQ/CobB/MinD/ParA nucleotide binding domain	This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA Swiss:P29946 and CbiP Swiss:Q05597 from S.typhimurium [4], and CobQ Swiss:Q52686 from R. capsulatus [3]. These amidases catalyse amidations to various side chai ...	This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA Swiss:P29946 and CbiP Swiss:Q05597 from S.typhimurium [4], and CobQ Swiss:Q52686 from R. capsulatus [3]. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [4]. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family [6].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Cell division topological specificity factor	ATPase activator activity molecular function activator activity molecular function regulator activity ATPase regulator activity identical protein binding protein binding binding	cell septum assembly cytokinesis cellular component biogenesis cellular component organization cellular component assembly cytokinetic process division septum site selection cellular process division septum assembly cell cycle cell division cellular component organization or biogenesis cell cycle process regulation of biological process cell septum assembly cytokinesis cellular component biogenesis cellular component organization cellular component assembly cytokinetic process division septum site selection cellular process division septum assembly cell cycle cell division cellular component organization or biogenesis cell cycle process regulation of biological process regulation of cellular process regulation of cellular component organization regulation of division septum assembly regulation of cell cycle process biological regulation regulation of cytokinetic process regulation of cellular component biogenesis regulation of cell septum assembly regulation of cell cycle	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane
A, B	Septum site-determining protein minD	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity identical protein binding protein binding	cell septum assembly cytokinesis cellular component biogenesis cellular component organization cellular component assembly cytokinetic process division septum site selection cellular process division septum assembly cell cycle cell division cellular component organization or biogenesis cell cycle process localization cell septum assembly cytokinesis cellular component biogenesis cellular component organization cellular component assembly cytokinetic process division septum site selection cellular process division septum assembly cell cycle cell division cellular component organization or biogenesis cell cycle process localization macromolecule localization intracellular mRNA localization RNA localization chromosome segregation	cellular anatomical structure cell pole intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR005527	Cell division topological specificity factor MinE	Family
C, D	IPR036707	Cell division topological specificity factor MinE superfamily	Homologous Superfamily
A, B	IPR010223	ATP binding protein MinD	Family
A, B	IPR002586	CobQ/CobB/MinD/ParA nucleotide binding domain	Domain
A, B	IPR050625	ParA/MinD ATPase	Family
A, B	IPR025501	ATP binding protein MinD/FleN	Family
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.