3R90 | pdb_00003r90

Crystal structure of Malignant T cell-amplified sequence 1 protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	PUA	e3r90L1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: PUA	ECOD (1.6)
L	MCT1_N	e3r90L2	A: a+b two layers	X: Cystatin-like	H: Pre-PUA domain (From Topology)	T: Pre-PUA domain	F: MCT1_N	ECOD (1.6)
K	PUA	e3r90K1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: PUA	ECOD (1.6)
K	MCT1_N	e3r90K2	A: a+b two layers	X: Cystatin-like	H: Pre-PUA domain (From Topology)	T: Pre-PUA domain	F: MCT1_N	ECOD (1.6)
J	PUA	e3r90J1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: PUA	ECOD (1.6)
J	MCT1_N	e3r90J2	A: a+b two layers	X: Cystatin-like	H: Pre-PUA domain (From Topology)	T: Pre-PUA domain	F: MCT1_N	ECOD (1.6)
I	PUA	e3r90I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: PUA	ECOD (1.6)
I	MCT1_N	e3r90I2	A: a+b two layers	X: Cystatin-like	H: Pre-PUA domain (From Topology)	T: Pre-PUA domain	F: MCT1_N	ECOD (1.6)
H	PUA	e3r90H1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: PUA	ECOD (1.6)
H	MCT1_N	e3r90H2	A: a+b two layers	X: Cystatin-like	H: Pre-PUA domain (From Topology)	T: Pre-PUA domain	F: MCT1_N	ECOD (1.6)
G	PUA	e3r90G1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: PUA	ECOD (1.6)
G	MCT1_N	e3r90G2	A: a+b two layers	X: Cystatin-like	H: Pre-PUA domain (From Topology)	T: Pre-PUA domain	F: MCT1_N	ECOD (1.6)
F	PUA	e3r90F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: PUA	ECOD (1.6)
F	MCT1_N	e3r90F2	A: a+b two layers	X: Cystatin-like	H: Pre-PUA domain (From Topology)	T: Pre-PUA domain	F: MCT1_N	ECOD (1.6)
E	PUA	e3r90E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: PUA	ECOD (1.6)
E	MCT1_N	e3r90E2	A: a+b two layers	X: Cystatin-like	H: Pre-PUA domain (From Topology)	T: Pre-PUA domain	F: MCT1_N	ECOD (1.6)
D	PUA	e3r90D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: PUA	ECOD (1.6)
D	MCT1_N	e3r90D2	A: a+b two layers	X: Cystatin-like	H: Pre-PUA domain (From Topology)	T: Pre-PUA domain	F: MCT1_N	ECOD (1.6)
C	PUA	e3r90C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: PUA	ECOD (1.6)
C	MCT1_N	e3r90C2	A: a+b two layers	X: Cystatin-like	H: Pre-PUA domain (From Topology)	T: Pre-PUA domain	F: MCT1_N	ECOD (1.6)
B	PUA	e3r90B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: PUA	ECOD (1.6)
B	MCT1_N	e3r90B2	A: a+b two layers	X: Cystatin-like	H: Pre-PUA domain (From Topology)	T: Pre-PUA domain	F: MCT1_N	ECOD (1.6)
A	PUA	e3r90A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: PUA	ECOD (1.6)
A	MCT1_N	e3r90A2	A: a+b two layers	X: Cystatin-like	H: Pre-PUA domain (From Topology)	T: Pre-PUA domain	F: MCT1_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
L	3.10.400.20	Alpha Beta	Roll	Sulfate adenylyltransferase	CATH (4.3.0)
K	3.10.400.20	Alpha Beta	Roll	Sulfate adenylyltransferase	CATH (4.3.0)
J	3.10.400.20	Alpha Beta	Roll	Sulfate adenylyltransferase	CATH (4.3.0)
I	3.10.400.20	Alpha Beta	Roll	Sulfate adenylyltransferase	CATH (4.3.0)
H	3.10.400.20	Alpha Beta	Roll	Sulfate adenylyltransferase	CATH (4.3.0)
G	3.10.400.20	Alpha Beta	Roll	Sulfate adenylyltransferase	CATH (4.3.0)
F	3.10.400.20	Alpha Beta	Roll	Sulfate adenylyltransferase	CATH (4.3.0)
E	3.10.400.20	Alpha Beta	Roll	Sulfate adenylyltransferase	CATH (4.3.0)
D	3.10.400.20	Alpha Beta	Roll	Sulfate adenylyltransferase	CATH (4.3.0)
C	3.10.400.20	Alpha Beta	Roll	Sulfate adenylyltransferase	CATH (4.3.0)
B	3.10.400.20	Alpha Beta	Roll	Sulfate adenylyltransferase	CATH (4.3.0)
A	3.10.400.20	Alpha Beta	Roll	Sulfate adenylyltransferase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF01472	PUA domain (PUA)	PUA domain	The PUA domain named after Pseudouridine synthase and Archaeosine transglycosylase, was detected in archaeal and eukaryotic pseudouridine synthases, archaeal archaeosine synthases, a family of predicted ATPases that may be involved in RNA modificatio ...	The PUA domain named after Pseudouridine synthase and Archaeosine transglycosylase, was detected in archaeal and eukaryotic pseudouridine synthases, archaeal archaeosine synthases, a family of predicted ATPases that may be involved in RNA modification, a family of predicted archaeal and bacterial rRNA methylases. Additionally, the PUA domain was detected in a family of eukaryotic proteins that also contain a domain homologous to the translation initiation factor eIF1/SUI1; these proteins may comprise a novel type of translation factors. Unexpectedly, the PUA domain was detected also in bacterial and yeast glutamate kinases; this is compatible with the demonstrated role of these enzymes in the regulation of the expression of other genes [1]. It is predicted that the PUA domain is an RNA binding domain.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF17832	Pre-PUA-like domain (Pre-PUA)	Pre-PUA-like domain	This Pre-PUA-like domain is found in a wide variety of proteins including Swiss:Q61211. the eukaryotic translation initiation factor 2D, where it is found at the N-terminus.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Malignant T cell-amplified sequence 1	translation factor activity translation initiation factor activity RNA binding binding nucleic acid binding RNA cap binding ribonucleoprotein complex binding protein-containing complex binding ribosomal small subunit binding ribosome binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process ribonucleoprotein complex biogenesis protein biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process ribonucleoprotein complex biogenesis protein biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly translational initiation cellular component organization or biogenesis protein metabolic process formation of translation preinitiation complex protein-containing complex organization primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cytoplasmic translational initiation metabolic process macromolecule metabolic process translation reinitiation viral gene expression viral process viral translation IRES-dependent viral translational initiation cellular component disassembly organelle organization organelle disassembly ribosome disassembly	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR015947	PUA-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004521	Uncharacterised domain CHP00451	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016437	MCT-1/Tma20	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR041366	Pre-PUA domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002478	PUA domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Pharos: Q9ULC4	astrocytic tumor lymphoplasmacytic lymphoma ovarian cancer hepatocellular carcinoma non-small cell lung carcinoma plasma cell myeloma lung cancer osteosarcoma