3R84 | pdb_00003r84

Structure of the Mediator head subcomplex Med11/22

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	Mediator subcomplex-like	8051778	3001613	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Mediator subcomplex-like	8051778	3001613	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Mediator subcomplex-like	8051778	3001613	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Mediator subcomplex-like	8051778	3001613	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Mediator subcomplex-like	8051778	3001613	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Mediator subcomplex-like	8051778	3001613	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Mediator subcomplex-like	8051778	3001613	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Mediator subcomplex-like	8051778	3001613	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Mediator subcomplex-like	8051778	3001613	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Mediator subcomplex-like	8051778	3001613	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Mediator subcomplex-like	8051778	3001613	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Mediator subcomplex-like	8051778	3001613	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Mediator subcomplex-like	8051777	3001613	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Mediator subcomplex-like	8051777	3001613	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Mediator subcomplex-like	8051777	3001613	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Mediator subcomplex-like	8051777	3001613	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Mediator subcomplex-like	8051777	3001613	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Mediator subcomplex-like	8051777	3001613	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Mediator subcomplex-like	8051777	3001613	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Mediator subcomplex-like	8051777	3001613	SCOP2B (2022-06-29)
G	SCOP2 Family	Mediator complex protein Med11-like	8044643	4004056	SCOP2 (2022-06-29)
G	SCOP2 Superfamily	Mediator subcomplex-like	8051777	3001613	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	Mediator subcomplex-like	8051777	3001613	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Mediator subcomplex-like	8051777	3001613	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Mediator subcomplex-like	8051777	3001613	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	Med22	e3r84X1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 22	F: Med22	ECOD (1.6)
V	Med22	e3r84V1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 22	F: Med22	ECOD (1.6)
T	Med22	e3r84T1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 22	F: Med22	ECOD (1.6)
R	Med22	e3r84R1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 22	F: Med22	ECOD (1.6)
P	Med22	e3r84P1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 22	F: Med22	ECOD (1.6)
N	Med22	e3r84N1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 22	F: Med22	ECOD (1.6)
L	Med22	e3r84L1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 22	F: Med22	ECOD (1.6)
J	Med22	e3r84J1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 22	F: Med22	ECOD (1.6)
H	Med22	e3r84H1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 22	F: Med22	ECOD (1.6)
F	Med22	e3r84F1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 22	F: Med22	ECOD (1.6)
D	Med22	e3r84D1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 22	F: Med22	ECOD (1.6)
B	Med22	e3r84B1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 22	F: Med22	ECOD (1.6)
W	Med11	e3r84W1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 11	F: Med11	ECOD (1.6)
U	Med11	e3r84U1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 11	F: Med11	ECOD (1.6)
S	Med11	e3r84S1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 11	F: Med11	ECOD (1.6)
Q	Med11	e3r84Q1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 11	F: Med11	ECOD (1.6)
O	Med11	e3r84O1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 11	F: Med11	ECOD (1.6)
M	Med11	e3r84M1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 11	F: Med11	ECOD (1.6)
K	Med11	e3r84K1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 11	F: Med11	ECOD (1.6)
I	Med11	e3r84I1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 11	F: Med11	ECOD (1.6)
G	Med11	e3r84G1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 11	F: Med11	ECOD (1.6)
E	Med11	e3r84E1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 11	F: Med11	ECOD (1.6)
C	Med11	e3r84C1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 11	F: Med11	ECOD (1.6)
A	Med11	e3r84A1	A: a+b complex topology	X: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)	T: Mediator of RNA polymerase II transcription subunit 11	F: Med11	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
X	6.10.280.160	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
V	6.10.280.160	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
T	6.10.280.160	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
R	6.10.280.160	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
P	6.10.280.160	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
N	6.10.280.160	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
L	6.10.280.160	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
J	6.10.280.160	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
H	6.10.280.160	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
F	6.10.280.160	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
D	6.10.280.160	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
B	6.10.280.160	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
W	1.10.287.3490	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
U	1.10.287.3490	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
S	1.10.287.3490	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
Q	1.10.287.3490	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
O	1.10.287.3490	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
M	1.10.287.3490	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
K	1.10.287.3490	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
I	1.10.287.3490	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
G	1.10.287.3490	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
E	1.10.287.3490	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
C	1.10.287.3490	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
A	1.10.287.3490	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	PF06179	Surfeit locus protein 5 subunit 22 of Mediator complex (Med22)	Surfeit locus protein 5 subunit 22 of Mediator complex	-	Family
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	PF10280	Mediator complex protein (Med11)	Mediator complex protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	Mediator of RNA polymerase II transcription subunit 22	transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity	regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription positive regulation of metabolic process regulation of DNA-templated transcription initiation regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription positive regulation of metabolic process regulation of DNA-templated transcription initiation regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process transcription initiation at RNA polymerase II promoter positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of biological process positive regulation of transcription initiation by RNA polymerase II biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression positive regulation of transcription by RNA polymerase II macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation positive regulation of DNA-templated transcription initiation positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of transcription initiation by RNA polymerase II cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process transcription elongation by RNA polymerase II positive regulation of transcription elongation by RNA polymerase II positive regulation of DNA-templated transcription, elongation regulation of DNA-templated transcription elongation regulation of transcription elongation by RNA polymerase II DNA-templated transcription elongation transcription preinitiation complex assembly cellular component organization cellular component biogenesis protein-DNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis protein-containing complex organization protein-DNA complex assembly RNA polymerase II preinitiation complex assembly	membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle mediator complex RNA polymerase II transcription regulator complex core mediator complex transcription regulator complex
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	Mediator of RNA polymerase II transcription subunit 11	transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity transcription factor binding basal transcription machinery binding protein-containing complex binding protein binding binding basal RNA polymerase II transcription machinery binding TFIIH-class transcription factor complex binding general transcription initiation factor binding RNA polymerase II general transcription initiation factor binding	regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription positive regulation of metabolic process regulation of DNA-templated transcription initiation regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription positive regulation of metabolic process regulation of DNA-templated transcription initiation regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process transcription initiation at RNA polymerase II promoter positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of biological process positive regulation of transcription initiation by RNA polymerase II biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression positive regulation of transcription by RNA polymerase II macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation positive regulation of DNA-templated transcription initiation positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of transcription initiation by RNA polymerase II cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process transcription elongation by RNA polymerase II positive regulation of transcription elongation by RNA polymerase II positive regulation of DNA-templated transcription, elongation regulation of DNA-templated transcription elongation regulation of transcription elongation by RNA polymerase II DNA-templated transcription elongation negative regulation of biological process negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process transcription preinitiation complex assembly cellular component organization cellular component biogenesis protein-DNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis protein-containing complex organization protein-DNA complex assembly RNA polymerase II preinitiation complex assembly	membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle mediator complex RNA polymerase II transcription regulator complex core mediator complex transcription regulator complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR009332	Mediator of RNA polymerase II transcription subunit 22	Family
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR016530	Mediator of RNA polymerase II transcription subunit 22, Saccharomycetes	Family
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR019404	Mediator complex, subunit Med11	Family