3R5V | pdb_00003r5v

The structure of calcium bound Thermococcus thioreducens inorganic pyrophosphatase at 298K

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d3r5vf_	All beta proteins	OB-fold	Inorganic pyrophosphatase	Inorganic pyrophosphatase	automated matches	(Thermococcus thioreducens ) [TaxId: 277988 ],	SCOPe (2.08)
E	d3r5ve_	All beta proteins	OB-fold	Inorganic pyrophosphatase	Inorganic pyrophosphatase	automated matches	(Thermococcus thioreducens ) [TaxId: 277988 ],	SCOPe (2.08)
D	d3r5vd_	All beta proteins	OB-fold	Inorganic pyrophosphatase	Inorganic pyrophosphatase	automated matches	(Thermococcus thioreducens ) [TaxId: 277988 ],	SCOPe (2.08)
C	d3r5vc_	All beta proteins	OB-fold	Inorganic pyrophosphatase	Inorganic pyrophosphatase	automated matches	(Thermococcus thioreducens ) [TaxId: 277988 ],	SCOPe (2.08)
B	d3r5vb_	All beta proteins	OB-fold	Inorganic pyrophosphatase	Inorganic pyrophosphatase	automated matches	(Thermococcus thioreducens ) [TaxId: 277988 ],	SCOPe (2.08)
A	d3r5va_	All beta proteins	OB-fold	Inorganic pyrophosphatase	Inorganic pyrophosphatase	automated matches	(Thermococcus thioreducens ) [TaxId: 277988 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Inorganic pyrophosphatase	8066109	3000589	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Inorganic pyrophosphatase	8066109	3000589	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Inorganic pyrophosphatase	8066109	3000589	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Inorganic pyrophosphatase	8066109	3000589	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Inorganic pyrophosphatase	8066109	3000589	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Inorganic pyrophosphatase	8066109	3000589	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Pyrophosphatase	e3r5vF2	A: beta barrels	X: OB-fold	H: Inorganic pyrophosphatase (From Topology)	T: Inorganic pyrophosphatase	F: Pyrophosphatase	ECOD (1.6)
E	Pyrophosphatase	e3r5vE2	A: beta barrels	X: OB-fold	H: Inorganic pyrophosphatase (From Topology)	T: Inorganic pyrophosphatase	F: Pyrophosphatase	ECOD (1.6)
D	Pyrophosphatase	e3r5vD2	A: beta barrels	X: OB-fold	H: Inorganic pyrophosphatase (From Topology)	T: Inorganic pyrophosphatase	F: Pyrophosphatase	ECOD (1.6)
C	Pyrophosphatase	e3r5vC1	A: beta barrels	X: OB-fold	H: Inorganic pyrophosphatase (From Topology)	T: Inorganic pyrophosphatase	F: Pyrophosphatase	ECOD (1.6)
B	Pyrophosphatase	e3r5vB1	A: beta barrels	X: OB-fold	H: Inorganic pyrophosphatase (From Topology)	T: Inorganic pyrophosphatase	F: Pyrophosphatase	ECOD (1.6)
A	Pyrophosphatase	e3r5vA1	A: beta barrels	X: OB-fold	H: Inorganic pyrophosphatase (From Topology)	T: Inorganic pyrophosphatase	F: Pyrophosphatase	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.90.80.10	Alpha Beta	Alpha-Beta Complex	Inorganic Pyrophosphatase	Inorganic pyrophosphatase	CATH (4.3.0)
E	3.90.80.10	Alpha Beta	Alpha-Beta Complex	Inorganic Pyrophosphatase	Inorganic pyrophosphatase	CATH (4.3.0)
D	3.90.80.10	Alpha Beta	Alpha-Beta Complex	Inorganic Pyrophosphatase	Inorganic pyrophosphatase	CATH (4.3.0)
C	3.90.80.10	Alpha Beta	Alpha-Beta Complex	Inorganic Pyrophosphatase	Inorganic pyrophosphatase	CATH (4.3.0)
B	3.90.80.10	Alpha Beta	Alpha-Beta Complex	Inorganic Pyrophosphatase	Inorganic pyrophosphatase	CATH (4.3.0)
A	3.90.80.10	Alpha Beta	Alpha-Beta Complex	Inorganic Pyrophosphatase	Inorganic pyrophosphatase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00719	Inorganic pyrophosphatase (Pyrophosphatase)	Inorganic pyrophosphatase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Tt-IPPase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity inorganic diphosphate phosphatase activity hydrolase activity, acting on acid anhydrides catalytic activity	phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR036649	Inorganic pyrophosphatase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR008162	Inorganic pyrophosphatase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.