3R5D

Pseudomonas aeruginosa DapD (PA3666) apoprotein

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8050589	3001804	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8050589	3001804	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8050589	3001804	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8050589	3001804	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8050589	3001804	SCOP2B (2022-06-29)
F	SCOP2 Family	Tetrahydrodipicolinate N-succinyltransferase Mtb-DapD-like	8050592	4006968	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Trimeric LpxA-like enzymes	8050589	3001804	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Hexapep_2	e3r5dA1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Trimeric LpxA-like enzymes (From Topology)	T: Trimeric LpxA-like enzymes	F: Hexapep_2	ECOD (1.6)
A	THDPS_N	e3r5dA2	A: a+b complex topology	X: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain (From Topology)	H: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain (From Topology)	T: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain	F: THDPS_N	ECOD (1.6)
B	Hexapep_2	e3r5dB1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Trimeric LpxA-like enzymes (From Topology)	T: Trimeric LpxA-like enzymes	F: Hexapep_2	ECOD (1.6)
B	THDPS_N	e3r5dB2	A: a+b complex topology	X: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain (From Topology)	H: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain (From Topology)	T: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain	F: THDPS_N	ECOD (1.6)
C	Hexapep_2	e3r5dC1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Trimeric LpxA-like enzymes (From Topology)	T: Trimeric LpxA-like enzymes	F: Hexapep_2	ECOD (1.6)
C	THDPS_N	e3r5dC2	A: a+b complex topology	X: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain (From Topology)	H: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain (From Topology)	T: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain	F: THDPS_N	ECOD (1.6)
D	Hexapep_2	e3r5dD1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Trimeric LpxA-like enzymes (From Topology)	T: Trimeric LpxA-like enzymes	F: Hexapep_2	ECOD (1.6)
D	THDPS_N	e3r5dD2	A: a+b complex topology	X: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain (From Topology)	H: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain (From Topology)	T: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain	F: THDPS_N	ECOD (1.6)
E	Hexapep_2	e3r5dE1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Trimeric LpxA-like enzymes (From Topology)	T: Trimeric LpxA-like enzymes	F: Hexapep_2	ECOD (1.6)
E	THDPS_N	e3r5dE2	A: a+b complex topology	X: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain (From Topology)	H: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain (From Topology)	T: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain	F: THDPS_N	ECOD (1.6)
F	Hexapep_2	e3r5dF1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Trimeric LpxA-like enzymes (From Topology)	T: Trimeric LpxA-like enzymes	F: Hexapep_2	ECOD (1.6)
F	THDPS_N	e3r5dF2	A: a+b complex topology	X: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain (From Topology)	H: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain (From Topology)	T: Tetrahydrodipicolinate N-succinyletransferase N-terminal domain	F: THDPS_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.2010	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
A	3.30.60.70	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2)	domain 1	CATH (4.3.0)
A	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
B	3.30.70.2010	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
B	3.30.60.70	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2)	domain 1	CATH (4.3.0)
B	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
C	3.30.70.2010	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
C	3.30.60.70	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2)	domain 1	CATH (4.3.0)
C	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
D	3.30.70.2010	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
D	3.30.60.70	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2)	domain 1	CATH (4.3.0)
D	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
E	3.30.70.2010	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
E	3.30.60.70	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2)	domain 1	CATH (4.3.0)
E	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
F	3.30.70.2010	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
F	3.30.60.70	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2)	domain 1	CATH (4.3.0)
F	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF14790	Tetrahydrodipicolinate N-succinyltransferase N-terminal (THDPS_N)	Tetrahydrodipicolinate N-succinyltransferase N-terminal	This is the N-terminal domain of 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [1].	Domain
A, B, C, D, E A, B, C, D, E, F	PF14789	Tetrahydrodipicolinate N-succinyltransferase middle (THDPS_M)	Tetrahydrodipicolinate N-succinyltransferase middle	This is the middle domain of 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [1].	Domain
A, B, C, D, E A, B, C, D, E, F	PF14602	Hexapeptide repeat of succinyl-transferase (Hexapep_2)	Hexapeptide repeat of succinyl-transferase	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Tetrahydrodipicolinate N-succinyletransferase	N-succinyltransferase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity succinyltransferase activity catalytic activity N-acyltransferase activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding	diaminopimelate biosynthetic process oxoacid metabolic process cellular biosynthetic process organonitrogen compound biosynthetic process lipid biosynthetic process amino acid metabolic process organic acid metabolic process organic acid biosynthetic process carboxylic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process nitrogen compound metabolic process small molecule metabolic process dicarboxylic acid biosynthetic process diaminopimelate biosynthetic process oxoacid metabolic process cellular biosynthetic process organonitrogen compound biosynthetic process lipid biosynthetic process amino acid metabolic process organic acid metabolic process organic acid biosynthetic process carboxylic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process nitrogen compound metabolic process small molecule metabolic process dicarboxylic acid biosynthetic process organonitrogen compound metabolic process small molecule biosynthetic process cellular metabolic process dicarboxylic acid metabolic process carboxylic acid metabolic process fatty acid derivative biosynthetic process primary metabolic process fatty acid derivative metabolic process diaminopimelate metabolic process amino acid biosynthetic process biosynthetic process metabolic process cellular process lipid metabolic process lysine metabolic process aspartate family amino acid biosynthetic process aspartate family amino acid metabolic process alpha-amino acid metabolic process lysine biosynthetic process L-amino acid biosynthetic process L-amino acid metabolic process proteinogenic amino acid metabolic process lysine biosynthetic process via diaminopimelate proteinogenic amino acid biosynthetic process alpha-amino acid biosynthetic process	intracellular anatomical structure cytoplasm cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR038361	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR026586	Type 2 tetrahydrodipicolinate N-succinyltransferase family	Family
A, B, C, D, E A, B, C, D, E, F	IPR032784	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR019876	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, gammaproteobacteria	Family
A, B, C, D, E A, B, C, D, E, F	IPR001451	Hexapeptide repeat	Repeat

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.