3R4D
Crystal structure of mouse coronavirus receptor-binding domain complexed with its murine receptor
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054511 | 3000071 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054803 | 3000071 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054803 | 3000071 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054511 | 3000071 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Coronavirus spike S1 glycoprotein N-terminal domain-like | 8045606 | 4004563 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Concanavalin A-like lectins/glucanases | 8091042 | 3000120 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8091042 | 3000120 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07686 | e3r4dA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
A | PF13927 | e3r4dA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF13927 | ECOD (1.6) |
C | PF07686 | e3r4dC3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C | PF13927 | e3r4dC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF13927 | ECOD (1.6) |
B | PF16451 | e3r4dB1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
D | PF16451 | e3r4dD1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.60.120.960 | Mainly Beta | Sandwich | Jelly Rolls | Spike glycoprotein, N-terminal domain | CATH (4.3.0) |
D | 2.60.120.960 | Mainly Beta | Sandwich | Jelly Rolls | Spike glycoprotein, N-terminal domain | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
Ceacam1, CEA-related cell adhesion molecule 1, isoform 1/2S | 1V-1C-LIKE | Mus musculus (house mouse) | CEACAM1*01 | V-LIKE-DOMAIN V-LIKE, C-LIKE-DOMAIN C-LIKE | RPI | 1V-1C-LIKE | IMGT (202416-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain | |
PF13927 | Immunoglobulin domain (Ig_3) | Immunoglobulin domain | This family contains immunoglobulin-like domains. | Domain | |