3QVD
Exposure of rubrerythrin from Pyrococcus furiosus to peroxide, fifteen second time point.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Rubredoxin-like | 8036856 | 3001257 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ferritin-like | 8036854 | 3001658 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ferritin-like | 8036854 | 3001658 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Rubredoxin-like | 8036856 | 3001257 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ferritin-like | 8036854 | 3001658 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Rubredoxin-like | 8036856 | 3001257 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ferritin-like | 8036854 | 3001658 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Rubredoxin-like | 8036856 | 3001257 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Rubredoxin-like | 8036856 | 3001257 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ferritin-like | 8036854 | 3001658 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Rubredoxin-like | 8036856 | 3001257 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ferritin-like | 8036854 | 3001658 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Rubredoxin-like | 8036856 | 3001257 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ferritin-like | 8036854 | 3001658 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Rubredoxin-like | 8036856 | 3001257 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ferritin-like | 8036854 | 3001658 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02915 | e3qvdA3 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: PF02915 | ECOD (1.6) |
A | PF21349 | e3qvdA4 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF21349 | ECOD (1.6) |
B | PF02915 | e3qvdB3 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: PF02915 | ECOD (1.6) |
B | PF21349 | e3qvdB4 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF21349 | ECOD (1.6) |
D | PF02915 | e3qvdD3 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: PF02915 | ECOD (1.6) |
D | PF21349 | e3qvdD2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF21349 | ECOD (1.6) |
E | PF02915 | e3qvdE3 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: PF02915 | ECOD (1.6) |
E | PF21349 | e3qvdE4 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF21349 | ECOD (1.6) |
F | PF02915 | e3qvdF3 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: PF02915 | ECOD (1.6) |
F | PF21349 | e3qvdF4 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF21349 | ECOD (1.6) |
G | PF02915 | e3qvdG3 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: PF02915 | ECOD (1.6) |
G | PF21349 | e3qvdG4 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF21349 | ECOD (1.6) |
H | PF02915 | e3qvdH3 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: PF02915 | ECOD (1.6) |
H | PF21349 | e3qvdH4 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF21349 | ECOD (1.6) |
C | PF02915 | e3qvdC3 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: PF02915 | ECOD (1.6) |
C | PF21349 | e3qvdC4 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF21349 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02915 | Rubrerythrin (Rubrerythrin) | Rubrerythrin | This domain has a ferritin-like fold. | Domain | |
PF21349 | Rubrerythrin, rubredoxin-like domain (RUBY_RBDX) | Rubrerythrin, rubredoxin-like domain | Rubrerythrin (RUBY) is a fusion protein containing an N-terminal diiron-binding domain (Pfam:PF02915) and a C-terminal rubredoxin-like domain. RUBY may play a role in oxidative stress. This entry represents the rubredoxin-like domain of RUBY and rev ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Rubrerythrin | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009040 | Ferritin-like diiron domain | Domain | |
IPR012347 | Ferritin-like | Homologous Superfamily | |
IPR009078 | Ferritin-like superfamily | Homologous Superfamily | |
IPR024934 | Rubredoxin-like domain | Domain | |
IPR003251 | Rubrerythrin, diiron-binding domain | Domain | |
IPR048574 | Rubrerythrin, rubredoxin-like domain | Domain |