3QU4 | pdb_00003qu4

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron, asp13ala mutant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d3qu4h_	Alpha and beta proteins (a/b)	HAD-like	HAD-like	automated matches	automated matches	(Bacteroides thetaiotaomicron ) [TaxId: 818 ],	SCOPe (2.08)
G	d3qu4g_	Alpha and beta proteins (a/b)	HAD-like	HAD-like	automated matches	automated matches	(Bacteroides thetaiotaomicron ) [TaxId: 818 ],	SCOPe (2.08)
F	d3qu4f_	Alpha and beta proteins (a/b)	HAD-like	HAD-like	automated matches	automated matches	(Bacteroides thetaiotaomicron ) [TaxId: 818 ],	SCOPe (2.08)
E	d3qu4e1	Alpha and beta proteins (a/b)	HAD-like	HAD-like	automated matches	automated matches	(Bacteroides thetaiotaomicron ) [TaxId: 818 ],	SCOPe (2.08)
E	d3qu4e2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacteroides thetaiotaomicron ) [TaxId: 818 ],	SCOPe (2.08)
D	d3qu4d1	Alpha and beta proteins (a/b)	HAD-like	HAD-like	automated matches	automated matches	(Bacteroides thetaiotaomicron ) [TaxId: 818 ],	SCOPe (2.08)
D	d3qu4d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacteroides thetaiotaomicron ) [TaxId: 818 ],	SCOPe (2.08)
C	d3qu4c_	Alpha and beta proteins (a/b)	HAD-like	HAD-like	automated matches	automated matches	(Bacteroides thetaiotaomicron ) [TaxId: 818 ],	SCOPe (2.08)
B	d3qu4b_	Alpha and beta proteins (a/b)	HAD-like	HAD-like	automated matches	automated matches	(Bacteroides thetaiotaomicron ) [TaxId: 818 ],	SCOPe (2.08)
A	d3qu4a_	Alpha and beta proteins (a/b)	HAD-like	HAD-like	automated matches	automated matches	(Bacteroides thetaiotaomicron ) [TaxId: 818 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	HAD-like	8060384	3001890	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	HAD-like	8060384	3001890	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	HAD-like	8060384	3001890	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	HAD-like	8060384	3001890	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HAD-like	8060384	3001890	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	HAD-like	8060384	3001890	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	HAD-like	8060384	3001890	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	HAD-like	8060384	3001890	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	HAD_2	e3qu4H1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: HAD_2	ECOD (1.6)
G	HAD_2	e3qu4G1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: HAD_2	ECOD (1.6)
F	HAD_2	e3qu4F1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: HAD_2	ECOD (1.6)
E	HAD_2	e3qu4E1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: HAD_2	ECOD (1.6)
D	HAD_2	e3qu4D1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: HAD_2	ECOD (1.6)
C	HAD_2	e3qu4C1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: HAD_2	ECOD (1.6)
B	HAD_2	e3qu4B1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: HAD_2	ECOD (1.6)
A	HAD_2	e3qu4A1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: HAD_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
H	1.10.150.240	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
G	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
G	1.10.150.240	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
F	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
F	1.10.150.240	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
E	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
E	1.10.150.240	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
D	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
D	1.10.150.240	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
C	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
C	1.10.150.240	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
B	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
B	1.10.150.240	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
A	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
A	1.10.150.240	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF13419	Haloacid dehalogenase-like hydrolase (HAD_2)	Haloacid dehalogenase-like hydrolase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	INORGANIC PYROPHOSPHATASE	phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds carbohydrate phosphatase activity phosphatase activity hydrolase activity catalytic activity sugar-phosphatase activity cation binding ion binding binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036412	HAD-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR023214	HAD superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR006439	HAD hydrolase, subfamily IA	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR041492	Haloacid dehalogenase-like hydrolase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR023198	Phosphoglycolate phosphatase-like, domain 2	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR051806	HAD-like Sugar Phosphate Phosphatase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.