3QM3 | pdb_00003qm3

1.85 Angstrom Resolution Crystal Structure of Fructose-bisphosphate Aldolase (Fba) from Campylobacter jejuni

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d3qm3h1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class II FBP aldolase	automated matches	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
H	d3qm3h2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
G	d3qm3g1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class II FBP aldolase	automated matches	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
G	d3qm3g2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
F	d3qm3f1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class II FBP aldolase	automated matches	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
F	d3qm3f2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
E	d3qm3e1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class II FBP aldolase	automated matches	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
E	d3qm3e2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
D	d3qm3d1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class II FBP aldolase	automated matches	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
D	d3qm3d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
C	d3qm3c1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class II FBP aldolase	automated matches	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
C	d3qm3c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
B	d3qm3b1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class II FBP aldolase	automated matches	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
B	d3qm3b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
A	d3qm3a1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class II FBP aldolase	automated matches	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)
A	d3qm3a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Campylobacter jejuni ) [TaxId: 197 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Aldolase	8075670	3000445	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Aldolase	8075670	3000445	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Aldolase	8075670	3000445	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Aldolase	8075670	3000445	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Aldolase	8075670	3000445	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Aldolase	8075670	3000445	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Aldolase	8075670	3000445	SCOP2B (2022-06-29)
A	SCOP2 Family	Class II FBP aldolase	8075669	4003234	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Aldolase	8075670	3000445	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H		e3qm3H1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: AAA	F:	ECOD (20:10:01)
G		e3qm3G1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: AAA	F:	ECOD (20:10:01)
F		e3qm3F1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: AAA	F:	ECOD (20:10:01)
E		e3qm3E1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: AAA	F:	ECOD (20:10:01)
D		e3qm3D1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: AAA	F:	ECOD (20:10:01)
C		e3qm3C1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: AAA	F:	ECOD (20:10:01)
B		e3qm3B1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: AAA	F:	ECOD (20:10:01)
A		e3qm3A1	A: Acyl-CoA binding protein-like	X: L30e-like	H: L30e-like	T: TetR_N	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
G	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
F	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
E	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
D	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
C	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
B	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF01116	Fructose-bisphosphate aldolase class-II (F_bP_aldolase)	Fructose-bisphosphate aldolase class-II		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Fructose-bisphosphate aldolase	fructose-bisphosphate aldolase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process nucleoside phosphate catabolic process organic acid metabolic process nucleobase-containing compound metabolic process glycolytic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process nucleoside phosphate catabolic process organic acid metabolic process nucleobase-containing compound metabolic process glycolytic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process purine ribonucleotide catabolic process phosphorus metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyruvate metabolic process purine nucleoside diphosphate metabolic process primary metabolic process purine-containing compound catabolic process nucleotide metabolic process nucleobase-containing compound catabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process metabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration catabolic process ATP metabolic process energy derivation by oxidation of organic compounds purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate metabolic process carbohydrate derivative catabolic process ADP catabolic process carboxylic acid metabolic process generation of precursor metabolites and energy purine-containing compound metabolic process ADP metabolic process organophosphate metabolic process purine ribonucleoside diphosphate metabolic process cellular process purine ribonucleoside diphosphate catabolic process monosaccharide metabolic process small molecule biosynthetic process carbohydrate biosynthetic process hexose metabolic process monosaccharide biosynthetic process gluconeogenesis hexose biosynthetic process biosynthetic process glucose metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000771	Fructose-bisphosphate aldolase, class-II	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR006411	Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.