3QJL
One RAMP protein binding different RNA substrates
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Cas6-like | 8049679 | 4006590 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | CRISPR-associated proteins | 8052187 | 3001554 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | CRISPR-associated proteins | 8052188 | 3001554 | SCOP2 (2022-06-29) |
C [auth B] | SCOP2B Superfamily | CRISPR-associated proteins | 8052187 | 3001554 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | CRISPR-associated proteins | 8052188 | 3001554 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Cas_Cas6 | e3qjlA4 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: Cas_Cas6 | ECOD (1.6) |
A | Cas6_I-A | e3qjlA3 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: Cas6_I-A | ECOD (1.6) |
C [auth B] | Cas_Cas6 | e3qjlB4 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: Cas_Cas6 | ECOD (1.6) |
C [auth B] | Cas6_I-A | e3qjlB3 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: Cas6_I-A | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.1890 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
A | 3.30.70.1900 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
C [auth B] | 3.30.70.1890 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
C [auth B] | 3.30.70.1900 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF21350 | CRISPR-associated protein Cas6, N-terminal (Cas6_I-A) | CRISPR-associated protein Cas6, N-terminal | Cas6 is an endoribonuclease that generates crRNAs for invader defense in prokaryotes [1-3]. Cas6 consists of two two ferredoxin-like folds that are also found in other RNA-binding proteins. This entry represents the N-terminal ferredoxin-like domain ... | Domain |
A, C [auth B] | PF01881 | CRISPR associated protein Cas6, C-terminal (Cas_Cas6_C) | CRISPR associated protein Cas6, C-terminal | This group of families is one of several protein families that are always found associated with prokaryotic CRISPRs, themselves a family of clustered regularly interspaced short palindromic repeats, DNA repeats found in nearly half of all bacterial a ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, C [auth B] | Putative uncharacterized protein PH0350 |
| - | |
B [auth X], D [auth R] | RNA (5'-R(*GP*UP*UP*AP*CP*AP*AP*UP*AP*AP*GP*A)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR049435 | CRISPR associated protein Cas6, C-terminal domain | Domain |
A, C [auth B] | IPR045747 | CRISPR-associated protein Cas6, N-terminal domain superfamily | Homologous Superfamily |
A, C [auth B] | IPR010156 | CRISPR-associated endoribonuclease Cas6 | Family |