3QGF
Crystal structure of the hepatitis C virus NS5B RNA-dependent RNA polymerase complex with (2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5H-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid and (2R)-4-(6-chloropyridazin-3-yl)-N-(4-methoxybenzyl)-1-{[4-(trifluoromethoxy)phenyl]sulfonyl}piperazine-2-carboxamide
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3qgfa_ | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | RNA-dependent RNA-polymerase | Viral RNA polymerase | (Hepatitis C virus subtype 1b ) [TaxId: 31647 ], | SCOPe (2.08) |
B | d3qgfb_ | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | RNA-dependent RNA-polymerase | Viral RNA polymerase | (Hepatitis C virus subtype 1b ) [TaxId: 31647 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RdRP_3_2nd | e3qgfA1 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: RdRP_3_2nd | ECOD (1.6) |
A | RdRP_3_1st | e3qgfA2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RdRP_3_1st | ECOD (1.6) |
B | RdRP_3_2nd | e3qgfB1 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: RdRP_3_2nd | ECOD (1.6) |
B | RdRP_3_1st | e3qgfB2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RdRP_3_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00998 | Viral RNA dependent RNA polymerase (RdRP_3) | Viral RNA dependent RNA polymerase | - | Family |