3PVE | pdb_00003pve

Crystal structure of the G2 domain of Agrin from Mus Musculus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3pvea_	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	automated matches	automated matches	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d3pveb_	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	automated matches	automated matches	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MoCF_biosynth	e3pveA1	A: a/b three-layered sandwiches	X: N-terminal beta-sandwich domain in anthrax protective antigen	H: Macro domain-like	T: Macro domain-like	F: MoCF_biosynth	ECOD (v294.1)
B	Gal-bind_lectin	e3pveB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Gal-bind_lectin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
B	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00054	Laminin G domain (Laminin_G_1)	Laminin G domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Agrin, Agrin protein	glycosaminoglycan binding chondroitin sulfate binding binding carbohydrate derivative binding sulfur compound binding neurotransmitter receptor regulator activity acetylcholine receptor regulator activity molecular function regulator activity signaling receptor regulator activity molecular function inhibitor activity ATPase inhibitor activity BMP binding protein binding cytokine binding glycosaminoglycan binding chondroitin sulfate binding binding carbohydrate derivative binding sulfur compound binding neurotransmitter receptor regulator activity acetylcholine receptor regulator activity molecular function regulator activity signaling receptor regulator activity molecular function inhibitor activity ATPase inhibitor activity BMP binding protein binding cytokine binding transporter inhibitor activity transporter regulator activity heparan sulfate proteoglycan binding proteoglycan binding sialic acid binding organic acid binding ion binding anion binding carboxylic acid binding small molecule binding cation binding calcium ion binding metal ion binding dystroglycan binding molecular function activator activity receptor ligand activity signaling receptor activator activity transforming growth factor beta binding growth factor binding transmembrane transporter binding	regulation of localization cellular localization regulation of cellular process regulation of protein localization positive regulation of biological process cellular component organization localization neuromuscular junction development receptor clustering synapse organization cellular component organization or biogenesis intracellular protein localization regulation of skeletal muscle acetylcholine-gated channel clustering regulation of receptor clustering regulation of localization cellular localization regulation of cellular process regulation of protein localization positive regulation of biological process cellular component organization localization neuromuscular junction development receptor clustering synapse organization cellular component organization or biogenesis intracellular protein localization regulation of skeletal muscle acetylcholine-gated channel clustering regulation of receptor clustering postsynaptic membrane organization regulation of protein localization to membrane positive regulation of cellular process membrane organization regulation of biological process postsynapse organization positive regulation of receptor clustering skeletal muscle acetylcholine-gated channel clustering biological regulation positive regulation of protein localization to membrane localization within membrane protein localization to membrane positive regulation of skeletal muscle acetylcholine-gated channel clustering cell junction organization regulation of cellular localization macromolecule localization positive regulation of protein localization cellular process plasma membrane organization endomembrane system organization neuron apoptotic process positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process positive regulation of neuron apoptotic process programmed cell death regulation of neuron apoptotic process transport sodium ion export across plasma membrane monoatomic ion transmembrane transport negative regulation of monoatomic ion transport negative regulation of biological process sodium ion transmembrane transport negative regulation of transport regulation of monoatomic ion transmembrane transport export across plasma membrane regulation of sodium ion transport metal ion transport regulation of sodium ion transmembrane transport negative regulation of transmembrane transport monoatomic cation transmembrane transport negative regulation of monoatomic ion transmembrane transport negative regulation of cellular process monoatomic ion transport negative regulation of cation transmembrane transport negative regulation of sodium ion export across plasma membrane monoatomic cation transport regulation of metal ion transport regulation of transport regulation of monoatomic ion transport regulation of sodium ion export across plasma membrane export from cell negative regulation of sodium ion transmembrane transport establishment of localization transmembrane transport regulation of transmembrane transport regulation of monoatomic cation transmembrane transport negative regulation of sodium ion transport sodium ion transport trans-synaptic signaling synaptic signaling signaling anterograde trans-synaptic signaling cell-cell signaling chemical synaptic transmission cell communication developmental process multicellular organismal process nervous system development cellular component biogenesis multicellular organism development cellular component assembly cell junction assembly anatomical structure development synapse assembly system development positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process regulation of protein binding positive regulation of molecular function regulation of molecular function positive regulation of protein binding regulation of binding positive regulation of binding cellular response to stimulus positive regulation of cell communication small GTPase-mediated signal transduction positive regulation of signal transduction response to stimulus regulation of small GTPase mediated signal transduction regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction regulation of signaling Rac protein signal transduction positive regulation of intracellular signal transduction regulation of Rac protein signal transduction positive regulation of Rac protein signal transduction regulation of response to stimulus regulation of cell communication positive regulation of small GTPase mediated signal transduction positive regulation of signaling cellular developmental process cell differentiation rhythmic process circadian rhythm modulation of chemical synaptic transmission regulation of synaptic activity regulation of trans-synaptic signaling regulation of synapse structure or activity regulation of biological quality axonogenesis cell projection organization neuron projection development cell projection morphogenesis neuron differentiation neuron projection morphogenesis taxis regulation of axon guidance chemotaxis regulation of cell projection organization response to external stimulus generation of neurons response to chemical regulation of locomotion regulation of neuron projection development regulation of cellular component organization regulation of response to external stimulus plasma membrane bounded cell projection morphogenesis cell development cell morphogenesis neurogenesis locomotion plasma membrane bounded cell projection organization axon guidance axon development regulation of chemotaxis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis neuron projection guidance neuron development regulation of plasma membrane bounded cell projection organization establishment of protein localization protein transport regulation of synapse organization heart process system process regulation of heart contraction regulation of system process regulation of cardiac muscle contraction cardiac muscle contraction muscle contraction muscle system process regulation of muscle system process striated muscle contraction circulatory system process regulation of blood circulation regulation of striated muscle contraction regulation of muscle contraction regulation of multicellular organismal process heart contraction blood circulation regulation of cytoskeleton organization microtubule cytoskeleton organization regulation of microtubule-based process regulation of organelle organization organelle organization microtubule-based process regulation of microtubule cytoskeleton organization cytoskeleton organization regulation of cardiac muscle cell membrane potential regulation of membrane potential filopodium assembly plasma membrane bounded cell projection assembly cell projection assembly cell surface receptor signaling pathway enzyme-linked receptor protein signaling pathway positive regulation of cellular component organization regulation of filopodium assembly positive regulation of cell projection organization positive regulation of filopodium assembly positive regulation of cellular component biogenesis regulation of cell projection assembly regulation of cellular component biogenesis regulation of plasma membrane bounded cell projection assembly positive regulation of plasma membrane bounded cell projection assembly positive regulation of neuromuscular junction development positive regulation of nervous system development regulation of growth developmental growth positive regulation of developmental process regulation of synaptic assembly at neuromuscular junction regulation of neuromuscular junction development positive regulation of developmental growth positive regulation of synaptic assembly at neuromuscular junction regulation of cell junction assembly positive regulation of multicellular organismal process positive regulation of synapse assembly regulation of developmental process regulation of nervous system development regulation of synapse assembly regulation of multicellular organismal development regulation of developmental growth growth positive regulation of cell junction assembly positive regulation of growth synaptic assembly at neuromuscular junction	basement membrane extracellular matrix cellular anatomical structure external encapsulating structure extracellular region cell periphery sarcolemma plasma membrane membrane synapse cell junction glutamatergic synapse growth cone axon basement membrane extracellular matrix cellular anatomical structure external encapsulating structure extracellular region cell periphery sarcolemma plasma membrane membrane synapse cell junction glutamatergic synapse growth cone axon cell projection distal axon neuron projection axonal growth cone plasma membrane bounded cell projection site of polarized growth cell surface membrane-bounded organelle intracellular anatomical structure Golgi apparatus membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen Golgi lumen intracellular organelle organelle lumen organelle cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR050372	Neurexin-related cell adhesion and synaptic protein	Family
A, B	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B	IPR002049	Laminin-type EGF domain	Domain
A, B	IPR003884	Factor I / membrane attack complex	Domain
A, B	IPR003645	Follistatin-like, N-terminal	Domain
A, B	IPR001881	EGF-like calcium-binding domain	Domain
A, B	IPR036364	SEA domain superfamily	Homologous Superfamily
A, B	IPR000082	SEA domain	Domain
A, B	IPR036058	Kazal domain superfamily	Homologous Superfamily
A, B	IPR002350	Kazal domain	Domain
A, B	IPR000742	EGF-like domain	Domain
A, B	IPR001791	Laminin G domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.