3PTO | pdb_00003pto

Crystal Structure of an empty Vesicular Stomatitis Virus Nucleocapsid Protein Complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d3ptoe_	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	VSIV (Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
D	d3ptod_	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	VSIV (Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
C	d3ptoc_	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	VSIV (Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
B	d3ptob_	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	VSIV (Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
A	d3ptoa_	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	VSIV (Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E		e3ptoE1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Gal-bind_lectin	F:	ECOD (20:10:01)
D		e3ptoD1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Gal-bind_lectin	F:	ECOD (20:10:01)
C		e3ptoC1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Gal-bind_lectin	F:	ECOD (20:10:01)
B		e3ptoB1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Gal-bind_lectin	F:	ECOD (20:10:01)
A		e3ptoA1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Gal-bind_lectin	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
E	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
D	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
D	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
C	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
C	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
B	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
B	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
A	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
A	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF00945	Rhabdovirus nucleocapsid protein (Rhabdo_ncap)	Rhabdovirus nucleocapsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Nucleoprotein	RNA binding binding nucleic acid binding	viral gene expression viral process viral transcription nucleobase-containing compound metabolic process RNA replication RNA metabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process nucleic acid metabolic process	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR035961	Rhabdovirus nucleoprotein-like	Homologous Superfamily
A, B, C, D, E	IPR000448	Rhabdovirus nucleocapsid	Domain
A, B, C, D, E	IPR023330	Rhabdovirus nucleocapsid, N-terminal	Homologous Superfamily
A, B, C, D, E	IPR023331	Rhabdovirus nucleocapsid, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.