3P3V | pdb_00003p3v

Crystal structure of a PTS dependent N-acetyl-galactosamine-IIB component (agaV, SPy_0631) from Streptococcus pyogenes at 1.65 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3p3vb1	Alpha and beta proteins (a/b)	PTS IIb component	PTS IIb component	automated matches	automated matches	(Streptococcus pyogenes serotype M1 ) [TaxId: 301447 ],	SCOPe (2.08)
B	d3p3vb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptococcus pyogenes serotype M1 ) [TaxId: 301447 ],	SCOPe (2.08)
A	d3p3va_	Alpha and beta proteins (a/b)	PTS IIb component	PTS IIb component	automated matches	automated matches	(Streptococcus pyogenes serotype M1 ) [TaxId: 301447 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	PTS IIb component	8079276	3000207	SCOP2B (2022-06-29)
A	SCOP2 Family	PTS IIb component-like	8079275	4000403	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PTS IIb component	8079276	3000207	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PTSIIB_sorb	e3p3vB1	A: a/b three-layered sandwiches	X: PTS IIb component (From Topology)	H: PTS IIb component (From Topology)	T: PTS IIb component	F: PTSIIB_sorb	ECOD (1.6)
A	PTSIIB_sorb	e3p3vA1	A: a/b three-layered sandwiches	X: PTS IIb component (From Topology)	H: PTS IIb component (From Topology)	T: PTS IIb component	F: PTSIIB_sorb	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.35.10	Alpha Beta	3-Layer(aba) Sandwich	Fructose Permease	Phosphotransferase system, sorbose subfamily IIB component	CATH (4.3.0)
A	3.40.35.10	Alpha Beta	3-Layer(aba) Sandwich	Fructose Permease	Phosphotransferase system, sorbose subfamily IIB component	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03830	PTS system sorbose subfamily IIB component (PTSIIB_sorb)	PTS system sorbose subfamily IIB component	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	PTS system, N-acetylgalactosamine-specific IIB component	kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups active transmembrane transporter activity protein-N(PI)-phosphohistidine-sugar phosphotransferase activity transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity phosphotransferase activity, alcohol group as acceptor	import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036667	Phosphotransferase system, sorbose subfamily IIB component superfamily	Homologous Superfamily
A, B	IPR004720	Phosphotransferase system, sorbose subfamily IIB component	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.