3P1Y
Crystal structure of the chimeric Archaeoglobus fulgidus RNA splicing endonuclease with the broadest substrate specificity
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | tRNA-intron endonuclease catalytic domain-like | 8040168 | 3000437 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | tRNA-intron endonuclease N-terminal domain-like | 8040172 | 3001683 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | tRNA-intron endonuclease catalytic domain-like | 8040170 | 3000437 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | tRNA-intron endonuclease N-terminal domain-like | 8040172 | 3001683 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | tRNA-intron endonuclease catalytic domain-like | 8040168 | 3000437 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | tRNA-intron endonuclease catalytic domain-like | 8040170 | 3000437 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | tRNA-intron endonuclease catalytic domain-like | 8040168 | 3000437 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | tRNA-intron endonuclease catalytic domain-like | 8040170 | 3000437 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | tRNA-intron endonuclease N-terminal domain-like | 8040172 | 3001683 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | tRNA-intron endonuclease catalytic domain-like | 8040170 | 3000437 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | tRNA-intron endonuclease N-terminal domain-like | 8040172 | 3001683 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | tRNA-intron endonuclease catalytic domain-like | 8040168 | 3000437 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e3p1yA3 | A: a+b two layers | X: Homing endonucleases-like | H: tRNA-intron endonuclease N-terminal domain-like (From Topology) | T: tRNA-intron endonuclease N-terminal domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF02778 | e3p1yA4 | A: a+b two layers | X: Homing endonucleases-like | H: tRNA-intron endonuclease N-terminal domain-like (From Topology) | T: tRNA-intron endonuclease N-terminal domain-like | F: PF02778 | ECOD (1.6) |
A | F_UNCLASSIFIED | e3p1yA1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: tRNA-intron endonuclease catalytic domain-like (From Topology) | T: tRNA-intron endonuclease catalytic domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF01974 | e3p1yA2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: tRNA-intron endonuclease catalytic domain-like (From Topology) | T: tRNA-intron endonuclease catalytic domain-like | F: PF01974 | ECOD (1.6) |
B | F_UNCLASSIFIED | e3p1yB3 | A: a+b two layers | X: Homing endonucleases-like | H: tRNA-intron endonuclease N-terminal domain-like (From Topology) | T: tRNA-intron endonuclease N-terminal domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF02778 | e3p1yB4 | A: a+b two layers | X: Homing endonucleases-like | H: tRNA-intron endonuclease N-terminal domain-like (From Topology) | T: tRNA-intron endonuclease N-terminal domain-like | F: PF02778 | ECOD (1.6) |
B | F_UNCLASSIFIED | e3p1yB1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: tRNA-intron endonuclease catalytic domain-like (From Topology) | T: tRNA-intron endonuclease catalytic domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF01974 | e3p1yB2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: tRNA-intron endonuclease catalytic domain-like (From Topology) | T: tRNA-intron endonuclease catalytic domain-like | F: PF01974 | ECOD (1.6) |
C | F_UNCLASSIFIED | e3p1yC3 | A: a+b two layers | X: Homing endonucleases-like | H: tRNA-intron endonuclease N-terminal domain-like (From Topology) | T: tRNA-intron endonuclease N-terminal domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF02778 | e3p1yC4 | A: a+b two layers | X: Homing endonucleases-like | H: tRNA-intron endonuclease N-terminal domain-like (From Topology) | T: tRNA-intron endonuclease N-terminal domain-like | F: PF02778 | ECOD (1.6) |
C | F_UNCLASSIFIED | e3p1yC1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: tRNA-intron endonuclease catalytic domain-like (From Topology) | T: tRNA-intron endonuclease catalytic domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF01974 | e3p1yC2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: tRNA-intron endonuclease catalytic domain-like (From Topology) | T: tRNA-intron endonuclease catalytic domain-like | F: PF01974 | ECOD (1.6) |
D | F_UNCLASSIFIED | e3p1yD6 | A: a+b two layers | X: Homing endonucleases-like | H: tRNA-intron endonuclease N-terminal domain-like (From Topology) | T: tRNA-intron endonuclease N-terminal domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF02778 | e3p1yD1 | A: a+b two layers | X: Homing endonucleases-like | H: tRNA-intron endonuclease N-terminal domain-like (From Topology) | T: tRNA-intron endonuclease N-terminal domain-like | F: PF02778 | ECOD (1.6) |
D | F_UNCLASSIFIED | e3p1yD5 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: tRNA-intron endonuclease catalytic domain-like (From Topology) | T: tRNA-intron endonuclease catalytic domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF01974 | e3p1yD4 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: tRNA-intron endonuclease catalytic domain-like (From Topology) | T: tRNA-intron endonuclease catalytic domain-like | F: PF01974 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02778 | tRNA intron endonuclease, N-terminal domain (tRNA_int_endo_N) | tRNA intron endonuclease, N-terminal domain | Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9. | Domain | |
PF01974 | tRNA intron endonuclease, catalytic C-terminal domain (tRNA_int_endo) | tRNA intron endonuclease, catalytic C-terminal domain | Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006677 | tRNA intron endonuclease, catalytic domain-like | Domain | |
IPR036740 | tRNA intron endonuclease, N-terminal domain superfamily | Homologous Superfamily | |
IPR023516 | tRNA-splicing endonuclease, archaeal long subfamily | Family | |
IPR011856 | tRNA endonuclease-like domain superfamily | Homologous Superfamily | |
IPR036167 | tRNA intron endonuclease, catalytic domain-like superfamily | Homologous Superfamily | |
IPR006678 | tRNA intron endonuclease, N-terminal | Domain | |
IPR006676 | tRNA-splicing endonuclease | Family | |
IPR006677 | tRNA intron endonuclease, catalytic domain-like | Domain | |
IPR036740 | tRNA intron endonuclease, N-terminal domain superfamily | Homologous Superfamily | |
IPR011856 | tRNA endonuclease-like domain superfamily | Homologous Superfamily | |
IPR036167 | tRNA intron endonuclease, catalytic domain-like superfamily | Homologous Superfamily | |
IPR006678 | tRNA intron endonuclease, N-terminal | Domain | |
IPR006676 | tRNA-splicing endonuclease | Family | |
IPR016442 | tRNA-splicing endonuclease, archaeal short subfamily | Family |