3OTP
Crystal structure of the DegP dodecamer with a model substrate
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PDZ domain-like | 8040752 | 3000388 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Trypsin-like serine proteases | 8040753 | 3000114 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Trypsin-like serine proteases | 8040753 | 3000114 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PDZ domain-like | 8040752 | 3000388 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PDZ domain-like | 8040752 | 3000388 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Trypsin-like serine proteases | 8040753 | 3000114 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Trypsin-like serine proteases | 8040753 | 3000114 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | PDZ domain-like | 8040752 | 3000388 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | PDZ domain-like | 8040752 | 3000388 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Trypsin-like serine proteases | 8040753 | 3000114 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Trypsin-like serine proteases | 8040753 | 3000114 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | PDZ domain-like | 8040752 | 3000388 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF13365 | e3otpA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: PF13365 | ECOD (1.6) |
A | PF00595 | e3otpA2 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PF00595 | ECOD (1.6) |
B | PF13365 | e3otpB10 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: PF13365 | ECOD (1.6) |
B | PF00595 | e3otpB11 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PF00595 | ECOD (1.6) |
C | PF13365 | e3otpC6 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: PF13365 | ECOD (1.6) |
C | PF00595 | e3otpC7 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PF00595 | ECOD (1.6) |
D | PF13365 | e3otpD10 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: PF13365 | ECOD (1.6) |
D | PF00595 | e3otpD11 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PF00595 | ECOD (1.6) |
E | PF13365 | e3otpE10 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: PF13365 | ECOD (1.6) |
E | PF00595 | e3otpE11 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PF00595 | ECOD (1.6) |
F | PF13365 | e3otpF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: PF13365 | ECOD (1.6) |
F | PF00595 | e3otpF6 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PF00595 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.10.120 | Mainly Beta | Beta Barrel | Thrombin, subunit H | CATH (4.3.0) | |
A | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
B | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
B | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
C | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
C | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
D | 2.40.10.120 | Mainly Beta | Beta Barrel | Thrombin, subunit H | CATH (4.3.0) | |
D | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
E | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
E | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
F | 2.40.10.120 | Mainly Beta | Beta Barrel | Thrombin, subunit H | CATH (4.3.0) | |
F | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13365 | Trypsin-like peptidase domain (Trypsin_2) | Trypsin-like peptidase domain | This family includes trypsin-like peptidase domains. | Domain | |
PF00595 | PDZ domain (PDZ) | PDZ domain | PDZ domains are found in diverse signaling proteins. | Domain | |
PF00062 | C-type lysozyme/alpha-lactalbumin family (Lys) | C-type lysozyme/alpha-lactalbumin family | Alpha-lactalbumin is the regulatory subunit of lactose synthase, changing the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. C-type lysozymes are secreted bacteriolytic enzymes that cleave the peptidoglycan of bac ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009003 | Peptidase S1, PA clan | Homologous Superfamily | |
IPR001940 | Peptidase S1C | Family | |
IPR036034 | PDZ superfamily | Homologous Superfamily | |
IPR011782 | Peptidase S1C, Do | Family | |
IPR001478 | PDZ domain | Domain | |
IPR001916 | Glycoside hydrolase, family 22 | Family | |
IPR023346 | Lysozyme-like domain superfamily | Homologous Superfamily | |
IPR019799 | Glycoside hydrolase family 22 domain | Domain | |
IPR000974 | Glycoside hydrolase, family 22, lysozyme | Family |