3OQC | pdb_00003oqc

Ubiquitin-fold modifier 1 Specific Protease, UfSP2

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	KOG2433	e3oqcB4	A: a+b two layers	X: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	H: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	T: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2	F: KOG2433	ECOD (1.6)
B	KOG2433	e3oqcB3	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: KOG2433	ECOD (1.6)
A	KOG2433	e3oqcA1	A: a+b two layers	X: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	H: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	T: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2	F: KOG2433	ECOD (1.6)
A	Peptidase_C78	e3oqcA2	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: Peptidase_C78	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.90.70.130	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (4.3.0)
A	3.90.70.130	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF20908	Ubiquitin-fold modifier 1 specific protease 2, N-terminal (UfSP2_N)	Ubiquitin-fold modifier 1 specific protease 2, N-terminal	This domain is found at the N-terminal end of the eukaryotic protein Ubiquitin-fold modifier 1 (Ufm1) specific protease 2 (UfSP2). UfSP2 is a cysteine protease which recognises and hydrolyses the peptide bond at the C-terminal Gly residue of the prot ...	This domain is found at the N-terminal end of the eukaryotic protein Ubiquitin-fold modifier 1 (Ufm1) specific protease 2 (UfSP2). UfSP2 is a cysteine protease which recognises and hydrolyses the peptide bond at the C-terminal Gly residue of the protein Ufm1, a ubiquitin- like modifier. This protein is organised into two domains: the catalytic C-terminal (Pfam:PF07910) and a N-terminal showing a six- stranded beta-sheet with five helices. This entry represents the most N-terminal beta-strand [1,2].	Domain
A, B	PF07910	Peptidase family C78 (Peptidase_C78)	Peptidase family C78	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Ufm1-specific protease 2	cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity deUFMylase activity catalytic activity	negative regulation of proteolysis regulation of cellular process catabolic process negative regulation of proteolysis involved in protein catabolic process proteolysis involved in protein catabolic process negative regulation of biological process macromolecule catabolic process regulation of primary metabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process proteolysis negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of proteolysis regulation of cellular process catabolic process negative regulation of proteolysis involved in protein catabolic process proteolysis involved in protein catabolic process negative regulation of biological process macromolecule catabolic process regulation of primary metabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process proteolysis negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process protein catabolic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process cellular response to stimulus intracellular receptor signaling pathway response to stimulus response to lipid signaling regulation of signal transduction hormone-mediated signaling pathway intracellular signal transduction cell communication cellular response to endogenous stimulus response to hormone regulation of intracellular signal transduction response to steroid hormone regulation of intracellular estrogen receptor signaling pathway regulation of intracellular steroid hormone receptor signaling pathway signal transduction nuclear receptor-mediated steroid hormone signaling pathway cellular response to steroid hormone stimulus steroid hormone receptor signaling pathway cellular response to hormone stimulus regulation of signaling response to endogenous stimulus estrogen receptor signaling pathway cellular response to chemical stimulus regulation of response to stimulus response to chemical cellular response to lipid regulation of cell communication nuclear receptor-mediated signaling pathway regulation of biosynthetic process multicellular organismal process regulation of type II interferon production type II interferon production gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process cytokine production regulation of cytokine production regulation of macromolecule biosynthetic process regulation of multicellular organismal process cellular component disassembly ribosome disassembly rescue of stalled ribosome translation protein biosynthetic process cellular component organization organelle organization organelle disassembly translational elongation cellular component organization or biogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle endoplasmic reticulum endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR049387	UFSP2, second domain	Domain
A, B	IPR012462	UFSP1/2/DUB, catalytic domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.