CRYSTAL STRUCTURE OF amidohydrolase from Thermotoga maritima MSB8


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
JFXa_inhibitione3ooqJ1 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: FXa_inhibitionECOD (v295.2)
JGlyco_hydro_70e3ooqJ2 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: Glyco_hydro_70ECOD (v295.2)
IFXa_inhibitione3ooqI1 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: FXa_inhibitionECOD (v295.2)
IGlyco_hydro_70e3ooqI2 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: Glyco_hydro_70ECOD (v295.2)
HFXa_inhibitione3ooqH1 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: FXa_inhibitionECOD (v295.2)
HGlyco_hydro_70e3ooqH2 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: Glyco_hydro_70ECOD (v295.2)
GFXa_inhibitione3ooqG1 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: FXa_inhibitionECOD (v295.2)
GGlyco_hydro_70e3ooqG2 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: Glyco_hydro_70ECOD (v295.2)
FH2THe3ooqF2 A: alpha arraysX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: H2THECOD (v295.2)
Fe3ooqF1 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF:ECOD (v295.2)
EFXa_inhibitione3ooqE1 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: FXa_inhibitionECOD (v295.2)
DDNA_pol3_alphae3ooqD1 A: alpha arraysX: Repetitive alpha hairpinsH: ARM repeatT: ARM repeatF: DNA_pol3_alphaECOD (v295.2)
CH2THe3ooqC2 A: alpha arraysX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: H2THECOD (v295.2)
CFXa_inhibitione3ooqC1 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: FXa_inhibitionECOD (v295.2)
BFXa_inhibitione3ooqB1 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: FXa_inhibitionECOD (v295.2)
BGlyco_hydro_70e3ooqB2 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: Glyco_hydro_70ECOD (v295.2)
AH2THe3ooqA2 A: alpha arraysX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: H2THECOD (v295.2)
AFXa_inhibitione3ooqA1 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: FXa_inhibitionECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
J2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
J3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
I2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
I3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
H2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
H3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
G2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
G3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
F2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
F3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
E2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
E3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
D2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
D3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
C2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
C3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
B2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
B3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
A2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
A3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01979Amidohydrolase family (Amidohydro_1)Amidohydrolase familyThis family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisatio ...This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source [2]. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit [3]. Dihydroorotases (EC:3.5.2.3) are also included [4-5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
amidohydrolase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR051781Metallo-dependent Hydrolase EnzymesFamily
A, B, C, D, E
IPR006680Amidohydrolase-relatedDomain
A, B, C, D, E
IPR011059Metal-dependent hydrolase, composite domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR032466Metal-dependent hydrolaseHomologous Superfamily