3ONR | pdb_00003onr

Crystal structure of the calcium chelating immunodominant antigen, calcium dodecin (Rv0379),from Mycobacterium tuberculosis with a novel calcium-binding site

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Dodecin	e3onrL1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
K	Dodecin	e3onrK1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
J	Dodecin	e3onrJ1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
I	Dodecin	e3onrI1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
H	Dodecin	e3onrH1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
G	Dodecin	e3onrG1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
F	Dodecin	e3onrF1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
E	Dodecin	e3onrE1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
D	Dodecin	e3onrD1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
C	Dodecin	e3onrC1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
B	Dodecin	e3onrB1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
A	Dodecin	e3onrA1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
K	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
J	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
I	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
H	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
G	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
F	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
E	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
D	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
C	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
B	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
A	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF07311	Dodecin (Dodecin)	Dodecin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PROTEIN TRANSPORT PROTEIN SECE2	cation binding ion binding binding metal ion binding small molecule binding	-	cell periphery cellular anatomical structure plasma membrane membrane external encapsulating structure cell wall peptidoglycan-based cell wall

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036694	Dodecin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009923	Dodecin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR025543	Dodecin-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.