3OM4 | pdb_00003om4

Crystal structure of B. megaterium levansucrase mutant K373A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3om4a_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	Levansucrase	Levansucrase	Bacillus fructosus (Priestia megaterium ) [TaxId: 1404 ],	SCOPe (2.08)
B	d3om4b_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	Levansucrase	Levansucrase	Bacillus fructosus (Priestia megaterium ) [TaxId: 1404 ],	SCOPe (2.08)
C	d3om4c_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	Levansucrase	Levansucrase	Bacillus fructosus (Priestia megaterium ) [TaxId: 1404 ],	SCOPe (2.08)
D	d3om4d_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	Levansucrase	Levansucrase	Bacillus fructosus (Priestia megaterium ) [TaxId: 1404 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Furanosidase-like	8072571	3000845	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Furanosidase-like	8072571	3000845	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Furanosidase-like	8072571	3000845	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Furanosidase-like	8072571	3000845	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Pkinase,Pkinase_C	e3om4A1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Pkinase,Pkinase_C	ECOD (v294.1)
B	Pkinase,Pkinase_C	e3om4B1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Pkinase,Pkinase_C	ECOD (v294.1)
C	Pkinase,Pkinase_C	e3om4C1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Pkinase,Pkinase_C	ECOD (v294.1)
D	Pkinase,Pkinase_C	e3om4D1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Pkinase,Pkinase_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
B	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
C	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
D	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Levansucrase	glycosyltransferase activity levansucrase activity transferase activity hexosyltransferase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	response to nutrient levels response to stimulus carbohydrate utilization	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR023296	Glycosyl hydrolase, five-bladed beta-propeller domain superfamily	Homologous Superfamily
A, B, C, D	IPR003469	Glycoside hydrolase, family 68	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.