3OL2
Receptor-ligand structure of Human Semaphorin 4D with Plexin B1.
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3ol2a3 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | I set domains | Semaphorin 4d Ig-like domain | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d3ol2a1 | All beta proteins | 7-bladed beta-propeller | Sema domain | Sema domain | Semaphorin 4d | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d3ol2a2 | Small proteins | Trefoil/Plexin domain-like | Plexin repeat | Plexin repeat | Semaphorin 4d | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Sema domain-like | 8037641 | 3000180 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054793 | 3000071 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Plexin repeat-like | 8037643 | 3000415 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | I-set_3 | e3ol2A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: I-set_3 | ECOD (1.6) |
A | Sema | e3ol2A2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Sema | ECOD (1.6) |
A | PSI_1 | e3ol2A3 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PSI_1 | ECOD (1.6) |
B | Sema_2 | e3ol2B3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Sema_2 | ECOD (1.6) |
B | PSI_1 | e3ol2B4 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PSI_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
A | 3.30.1680.10 | Alpha Beta | 2-Layer Sandwich | ligand-binding face of the semaphorins, domain 2 | ligand-binding face of the semaphorins, domain 2 | CATH (4.3.0) |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
B | 3.30.1680.10 | Alpha Beta | 2-Layer Sandwich | ligand-binding face of the semaphorins, domain 2 | ligand-binding face of the semaphorins, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01437 | Plexin repeat (PSI) | Plexin repeat | - | Family | |
PF01403 | Sema domain (Sema) | Sema domain | - | Repeat | |
PF00047 | Immunoglobulin domain (ig) | Immunoglobulin domain | Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-prot ... | Domain | |
PF01437 | Plexin repeat (PSI) | Plexin repeat | - | Family | |
PF01403 | Sema domain (Sema) | Sema domain | - | Repeat |