3OGM | pdb_00003ogm

Structure of COI1-ASK1 in complex with coronatine and the JAZ1 degron

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth Q]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)
F [auth R]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)
I [auth S]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)
N [auth U]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)
Q [auth V]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)
T [auth W]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)
W [auth X]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	e3ogmA1	A: Lipocalins/Streptavidin	X: SAM/DNA-glycosylase	H: SAM domain-like	T: Glyco_hydro_70	F:	ECOD (20:10:01)
D [auth C]	e3ogmC1	A: Lipocalins/Streptavidin	X: SAM/DNA-glycosylase	H: SAM domain-like	T: Glyco_hydro_70	F:	ECOD (20:10:01)
G [auth E]	e3ogmE1	A: Lipocalins/Streptavidin	X: SAM/DNA-glycosylase	H: SAM domain-like	T: Glyco_hydro_70	F:	ECOD (20:10:01)
J [auth G]	e3ogmG1	A: Lipocalins/Streptavidin	X: SAM/DNA-glycosylase	H: SAM domain-like	T: Glyco_hydro_70	F:	ECOD (20:10:01)
L [auth I]	e3ogmI1	A: Lipocalins/Streptavidin	X: SAM/DNA-glycosylase	H: SAM domain-like	T: Glyco_hydro_70	F:	ECOD (20:10:01)
O [auth K]	e3ogmK1	A: Lipocalins/Streptavidin	X: SAM/DNA-glycosylase	H: SAM domain-like	T: Glyco_hydro_70	F:	ECOD (20:10:01)
R [auth M]	e3ogmM1	A: Lipocalins/Streptavidin	X: SAM/DNA-glycosylase	H: SAM domain-like	T: Glyco_hydro_70	F:	ECOD (20:10:01)
U [auth O]	e3ogmO1	A: Lipocalins/Streptavidin	X: SAM/DNA-glycosylase	H: SAM domain-like	T: Glyco_hydro_70	F:	ECOD (20:10:01)
B	e3ogmB3	A: DEATH domain	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: NEL	F:	ECOD (20:10:01)
B	e3ogmB2	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: Rieske	F:	ECOD (20:10:01)
E [auth D]	e3ogmD3	A: DEATH domain	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: NEL	F:	ECOD (20:10:01)
E [auth D]	e3ogmD2	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: Rieske	F:	ECOD (20:10:01)
H [auth F]	e3ogmF3	A: DEATH domain	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: NEL	F:	ECOD (20:10:01)
H [auth F]	e3ogmF2	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: Rieske	F:	ECOD (20:10:01)
K [auth H]	e3ogmH2	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: p450	F:	ECOD (20:10:01)
M [auth J]	e3ogmJ3	A: DEATH domain	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: NEL	F:	ECOD (20:10:01)
M [auth J]	e3ogmJ2	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: Rieske	F:	ECOD (20:10:01)
P [auth L]	e3ogmL3	A: DEATH domain	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: NEL	F:	ECOD (20:10:01)
P [auth L]	e3ogmL2	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: Rieske	F:	ECOD (20:10:01)
S [auth N]	e3ogmN3	A: DEATH domain	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: NEL	F:	ECOD (20:10:01)
S [auth N]	e3ogmN2	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: Rieske	F:	ECOD (20:10:01)
V [auth P]	e3ogmP3	A: DEATH domain	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: NEL	F:	ECOD (20:10:01)
V [auth P]	e3ogmP2	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: Rieske	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
D [auth C]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
G [auth E]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
J [auth G]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
L [auth I]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
O [auth K]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
R [auth M]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
U [auth O]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
B	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
B	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
E [auth D]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
E [auth D]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
H [auth F]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
H [auth F]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
K [auth H]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
K [auth H]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
M [auth J]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
M [auth J]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
P [auth L]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
P [auth L]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
S [auth N]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
S [auth N]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
V [auth P]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
V [auth P]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	PF01466	Skp1 family, dimerisation domain (Skp1)	Skp1 family, dimerisation domain		Domain
B, E [auth D], H [auth F], K [auth H], M [auth J], B, E [auth D], H [auth F], K [auth H], M [auth J], P [auth L], S [auth N], V [auth P]	PF18791	Transport inhibitor response 1 protein domain (Transp_inhibit)	Transport inhibitor response 1 protein domain	-	Repeat
B, E [auth D], H [auth F], K [auth H], M [auth J], B, E [auth D], H [auth F], K [auth H], M [auth J], P [auth L], S [auth N], V [auth P]	PF18511	F-box (F-box_5)	F-box	Jasmonates are a family of plant hormones that regulate plant growth, development and responses to stress. COI1 is an F-box protein that functions as the substrate-recruiting module of the Skp1-Cul1-F-box protein (SCF) ubiquitin E3 ligase complex. Th ...	Jasmonates are a family of plant hormones that regulate plant growth, development and responses to stress. COI1 is an F-box protein that functions as the substrate-recruiting module of the Skp1-Cul1-F-box protein (SCF) ubiquitin E3 ligase complex. The role of COI1-mediated JAZ degradation in jasmonate (JA) signaling is analogous to auxin signaling through the receptor F-box protein transport inhibitor response 1 (TIR1) , which promotes hormone-dependent turnover of the AUX/IAA transcriptional repressors. The crystal structure of COI1 reveals a TIR1-like overall architecture, with an N-terminal tri-helical F-box motif bound to ASK1 and a C-terminal horseshoe-shaped solenoid domain formed by 18 tandem leucine-rich repeats. This entry represents the N-terminal F-box domain which is also found in other auxin signaling f-box proteins such as AFB1, AFB2 and AFB3 [1].	Domain
C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], T [auth W], W [auth X]	PF09425	Jas motif (Jas_motif)	Jas motif	-	Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	SKP1-like protein 1A	protein binding binding cullin family protein binding	cellular process cell cycle mitotic cell cycle chromosome segregation cell cycle process response to lipid response to stimulus response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound cellular response to stimulus cellular process cell cycle mitotic cell cycle chromosome segregation cell cycle process response to lipid response to stimulus response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound cellular response to stimulus regulation of cellular process signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus signal transduction cellular response to hormone stimulus regulation of biological process biological regulation jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus cellular response to lipid sexual reproduction reproductive process organelle fission meiotic cell cycle male meiotic nuclear division multicellular organismal reproductive process meiotic cell cycle process male gamete generation gamete generation cellular component organization nuclear division organelle organization meiotic nuclear division cellular component organization or biogenesis regulation of DNA recombination negative regulation of biological process regulation of primary metabolic process nucleobase-containing compound metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of metabolic process DNA recombination primary metabolic process regulation of macromolecule metabolic process DNA metabolic process nucleic acid metabolic process negative regulation of DNA recombination negative regulation of DNA metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process protein ubiquitination macromolecule modification protein metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process phosphorelay signal transduction system cellular response to ethylene stimulus intracellular signal transduction ethylene-activated signaling pathway response to ethylene response to auxin microtubule cytoskeleton organization microtubule-based process cytoskeleton organization auxin-activated signaling pathway cellular response to auxin stimulus	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle phragmoplast cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle phragmoplast cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex cytoskeleton spindle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton nucleus
B, E [auth D], H [auth F], K [auth H], M [auth J], B, E [auth D], H [auth F], K [auth H], M [auth J], P [auth L], S [auth N], V [auth P]	Coronatine-insensitive protein 1	-	biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to insect response to external stimulus response to external biotic stimulus response to biotic stimulus response to light stimulus shade avoidance response to radiation response to abiotic stimulus response to red or far red light catabolic process primary metabolic process biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to insect response to external stimulus response to external biotic stimulus response to biotic stimulus response to light stimulus shade avoidance response to radiation response to abiotic stimulus response to red or far red light catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process jasmonic acid and ethylene-dependent systemic resistance defense response defense response to symbiont defense response to other organism response to stress response to wounding developmental process multicellular organismal process plant organ development floral whorl development reproductive system development reproductive process stamen development flower development developmental process involved in reproduction reproductive shoot system development multicellular organism development anatomical structure development reproductive structure development shoot system development post-embryonic development phyllome development androecium development system development floral organ development defense response to fungus response to fungus response to lipid response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound cellular response to stimulus regulation of cellular process signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus signal transduction cellular response to hormone stimulus regulation of biological process biological regulation jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus cellular response to lipid response to far red light anther development dehiscence multicellular organismal reproductive process anther dehiscence protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal cellular response to nitrogen compound cellular response to ATP response to organophosphorus response to nitrogen compound response to ATP response to purine-containing compound extracellular ATP signaling regulation of defense response negative regulation of response to stimulus negative regulation of biological process regulation of response to stimulus regulation of response to stress negative regulation of defense response proteasomal protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process defense response to bacterium response to bacterium regulation of multicellular organismal development regulation of developmental process regulation of reproductive process regulation of shoot system development regulation of post-embryonic development regulation of multicellular organismal process regulation of flower development stomatal movement root development root system development	cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex
C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], T [auth W], W [auth X]	JAZ1 degron peptide	identical protein binding protein binding binding	regulation of defense response regulation of biological process response to stimulus regulation of response to stimulus defense response regulation of response to stress response to stress biological regulation response to wounding cellular response to stimulus regulation of cellular process response to lipid signaling regulation of jasmonic acid mediated signaling pathway regulation of defense response regulation of biological process response to stimulus regulation of response to stimulus defense response regulation of response to stress response to stress biological regulation response to wounding cellular response to stimulus regulation of cellular process response to lipid signaling regulation of jasmonic acid mediated signaling pathway regulation of signal transduction hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus response to hormone signal transduction cellular response to hormone stimulus regulation of signaling response to jasmonic acid response to fatty acid response to endogenous stimulus response to oxygen-containing compound jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus response to chemical cellular response to lipid regulation of cell communication cellular process developmental process multicellular organismal process reproductive system development reproductive process flower development developmental process involved in reproduction reproductive shoot system development multicellular organism development anatomical structure development reproductive structure development shoot system development post-embryonic development system development gametophyte development pollen development defense response to bacterium biological process involved in interspecies interaction between organisms response to other organism response to bacterium response to external stimulus response to external biotic stimulus response to biotic stimulus response to alkaline pH cellular response to environmental stimulus response to pH cellular response to pH response to abiotic stimulus cellular response to alkaline pH cellular response to abiotic stimulus regulation of cellular response to alkaline pH	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	IPR016073	SKP1 component, POZ domain	Domain
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	IPR001232	S-phase kinase-associated protein 1-like	Family
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	IPR036296	SKP1-like, dimerisation domain superfamily	Homologous Superfamily
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	IPR016072	SKP1 component, dimerisation	Domain
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	IPR016897	S-phase kinase-associated protein 1	Family
B, E [auth D], H [auth F], K [auth H], M [auth J], B, E [auth D], H [auth F], K [auth H], M [auth J], P [auth L], S [auth N], V [auth P]	IPR041567	COI1, F-box	Domain
B, E [auth D], H [auth F], K [auth H], M [auth J], B, E [auth D], H [auth F], K [auth H], M [auth J], P [auth L], S [auth N], V [auth P]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
B, E [auth D], H [auth F], K [auth H], M [auth J], B, E [auth D], H [auth F], K [auth H], M [auth J], P [auth L], S [auth N], V [auth P]	IPR041101	Transport inhibitor response 1 domain	Domain
C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], T [auth W], W [auth X]	IPR040390	TIFY/JAZ family	Family
C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], T [auth W], W [auth X]	IPR018467	CO/COL/TOC1, conserved site	Conserved Site
C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], T [auth W], W [auth X]	IPR010399	Tify domain	Domain