Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASkp1_POZe3ogkA1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZECOD (1.6)
D [auth C]Skp1_POZe3ogkC1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZECOD (1.6)
G [auth E]Skp1_POZe3ogkE1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZECOD (1.6)
J [auth G]Skp1_POZe3ogkG1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZECOD (1.6)
L [auth I]Skp1_POZe3ogkI1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZECOD (1.6)
O [auth K]Skp1_POZe3ogkK1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZECOD (1.6)
R [auth M]Skp1_POZe3ogkM1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZECOD (1.6)
U [auth O]Skp1_POZe3ogkO1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZECOD (1.6)
BLRR_8_4e3ogkB1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
BF-box-like_4e3ogkB2 A: alpha arraysX: F-box domain (From Topology)H: F-box domain (From Topology)T: F-box domainF: F-box-like_4ECOD (1.6)
E [auth D]LRR_8_4e3ogkD1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
E [auth D]F-box-like_4e3ogkD2 A: alpha arraysX: F-box domain (From Topology)H: F-box domain (From Topology)T: F-box domainF: F-box-like_4ECOD (1.6)
H [auth F]LRR_8_4e3ogkF1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
H [auth F]F-box-like_4e3ogkF2 A: alpha arraysX: F-box domain (From Topology)H: F-box domain (From Topology)T: F-box domainF: F-box-like_4ECOD (1.6)
K [auth H]LRR_8_4e3ogkH1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
K [auth H]F-box-like_4e3ogkH2 A: alpha arraysX: F-box domain (From Topology)H: F-box domain (From Topology)T: F-box domainF: F-box-like_4ECOD (1.6)
M [auth J]LRR_8_4e3ogkJ3 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
M [auth J]F-box-like_4e3ogkJ2 A: alpha arraysX: F-box domain (From Topology)H: F-box domain (From Topology)T: F-box domainF: F-box-like_4ECOD (1.6)
P [auth L]LRR_8_4e3ogkL3 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
P [auth L]F-box-like_4e3ogkL2 A: alpha arraysX: F-box domain (From Topology)H: F-box domain (From Topology)T: F-box domainF: F-box-like_4ECOD (1.6)
S [auth N]LRR_8_4e3ogkN3 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
S [auth N]F-box-like_4e3ogkN2 A: alpha arraysX: F-box domain (From Topology)H: F-box domain (From Topology)T: F-box domainF: F-box-like_4ECOD (1.6)
V [auth P]LRR_8_4e3ogkP3 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
V [auth P]F-box-like_4e3ogkP2 A: alpha arraysX: F-box domain (From Topology)H: F-box domain (From Topology)T: F-box domainF: F-box-like_4ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
D [auth C]3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
G [auth E]3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
J [auth G]3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
L [auth I]3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
O [auth K]3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
R [auth M]3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
U [auth O]3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
B1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase CATH (4.3.0)
B3.80.10.10 Alpha Beta Alpha-Beta Horseshoe Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Ribonuclease InhibitorCATH (4.3.0)
E [auth D]1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase CATH (4.3.0)
E [auth D]3.80.10.10 Alpha Beta Alpha-Beta Horseshoe Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Ribonuclease InhibitorCATH (4.3.0)
H [auth F]1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase CATH (4.3.0)
H [auth F]3.80.10.10 Alpha Beta Alpha-Beta Horseshoe Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Ribonuclease InhibitorCATH (4.3.0)
K [auth H]1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase CATH (4.3.0)
K [auth H]3.80.10.10 Alpha Beta Alpha-Beta Horseshoe Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Ribonuclease InhibitorCATH (4.3.0)
M [auth J]1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase CATH (4.3.0)
M [auth J]3.80.10.10 Alpha Beta Alpha-Beta Horseshoe Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Ribonuclease InhibitorCATH (4.3.0)
P [auth L]1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase CATH (4.3.0)
P [auth L]3.80.10.10 Alpha Beta Alpha-Beta Horseshoe Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Ribonuclease InhibitorCATH (4.3.0)
S [auth N]1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase CATH (4.3.0)
S [auth N]3.80.10.10 Alpha Beta Alpha-Beta Horseshoe Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Ribonuclease InhibitorCATH (4.3.0)
V [auth P]1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase CATH (4.3.0)
V [auth P]3.80.10.10 Alpha Beta Alpha-Beta Horseshoe Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Ribonuclease InhibitorCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01466Skp1 family, dimerisation domain (Skp1)Skp1 family, dimerisation domain- Domain
PF18791Transport inhibitor response 1 protein domain (Transp_inhibit)Transport inhibitor response 1 protein domain- Repeat
PF18511F-box (F-box_5)F-boxJasmonates are a family of plant hormones that regulate plant growth, development and responses to stress. COI1 is an F-box protein that functions as the substrate-recruiting module of the Skp1-Cul1-F-box protein (SCF) ubiquitin E3 ligase complex. Th ...Jasmonates are a family of plant hormones that regulate plant growth, development and responses to stress. COI1 is an F-box protein that functions as the substrate-recruiting module of the Skp1-Cul1-F-box protein (SCF) ubiquitin E3 ligase complex. The role of COI1-mediated JAZ degradation in jasmonate (JA) signaling is analogous to auxin signaling through the receptor F-box protein transport inhibitor response 1 (TIR1) , which promotes hormone-dependent turnover of the AUX/IAA transcriptional repressors. The crystal structure of COI1 reveals a TIR1-like overall architecture, with an N-terminal tri-helical F-box motif bound to ASK1 and a C-terminal horseshoe-shaped solenoid domain formed by 18 tandem leucine-rich repeats. This entry represents the N-terminal F-box domain which is also found in other auxin signaling f-box proteins such as AFB1, AFB2 and AFB3 [1].
Domain
PF09425Jas motif (Jas_motif)Jas motif- Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
SKP1-like protein 1A-
Coronatine-insensitive protein 1-
JAZ1 incomplete degron peptide

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR016073SKP1 component, POZ domainDomain
IPR036296SKP1-like, dimerisation domain superfamilyHomologous Superfamily
IPR001232S-phase kinase-associated protein 1-likeFamily
IPR016072SKP1 component, dimerisationDomain
IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
IPR016897S-phase kinase-associated protein 1Family
IPR041567COI1, F-boxDomain
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
IPR041101Transport inhibitor response 1 domainDomain
IPR040390TIFY/JAZ familyFamily
IPR018467CO/COL/TOC1, conserved siteConserved Site
IPR010399Tify domainDomain