3O79

Crystal Structure of Wild-type Rabbit PrP 126-230

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3o79a_	Alpha and beta proteins (a+b)	Prion-like	Prion-like	Prion-like	Prion protein domain	European rabbit,Japanese white rabbit,domestic rabbit,rabbits (Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
B	d3o79b_	Alpha and beta proteins (a+b)	Prion-like	Prion-like	Prion-like	Prion protein domain	European rabbit,Japanese white rabbit,domestic rabbit,rabbits (Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Prion-like	8100670	3001941	SCOP2B (2022-06-29)
B	SCOP2 Family	Prion-like	8100669	4000908	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Prion-like	8100670	3001941	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Prion	e3o79A1	A: a+b two layers	X: Prion-like (From Topology)	H: Prion-like (From Topology)	T: Prion-like	F: Prion	ECOD (1.6)
B	Prion	e3o79B1	A: a+b two layers	X: Prion-like (From Topology)	H: Prion-like (From Topology)	T: Prion-like	F: Prion	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.790.10	Mainly Alpha	Orthogonal Bundle	Major Prion Protein	Prion/Doppel protein, beta-ribbon domain	CATH (4.3.0)
B	1.10.790.10	Mainly Alpha	Orthogonal Bundle	Major Prion Protein	Prion/Doppel protein, beta-ribbon domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00377	Prion/Doppel alpha-helical domain (Prion)	Prion/Doppel alpha-helical domain	The prion protein is thought to be the infectious agent that causes transmissible spongiform encephalopathies, such as scrapie and BSE. It is thought that the prion protein can exist in two different forms: one is the normal cellular protein, and the ...	The prion protein is thought to be the infectious agent that causes transmissible spongiform encephalopathies, such as scrapie and BSE. It is thought that the prion protein can exist in two different forms: one is the normal cellular protein, and the other is the infectious form which can change the normal prion protein into the infectious form. It has been found that the prion alpha-helical domain is also found in the Doppel protein.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Rabbit PrP	cation binding ion binding binding metal ion binding small molecule binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis	membrane cellular anatomical entity side of membrane cell periphery plasma membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036924	Prion/Doppel beta-ribbon domain superfamily	Homologous Superfamily
A, B	IPR000817	Prion protein	Family
A, B	IPR022416	Prion/Doppel protein, beta-ribbon domain	Domain
A, B	IPR025860	Major prion protein N-terminal domain	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.