3O2O | pdb_00003o2o

Structure of E. coli ClpS ring complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3o2oa_	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	Adaptor protein ClpS (YljA)	Adaptor protein ClpS (YljA)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d3o2ob_	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	Adaptor protein ClpS (YljA)	Adaptor protein ClpS (YljA)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
C	d3o2oc_	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	Adaptor protein ClpS (YljA)	Adaptor protein ClpS (YljA)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
D	d3o2od_	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	Adaptor protein ClpS (YljA)	Adaptor protein ClpS (YljA)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
E	d3o2oe_	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	Adaptor protein ClpS (YljA)	Adaptor protein ClpS (YljA)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
F	d3o2of_	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	Adaptor protein ClpS (YljA)	Adaptor protein ClpS (YljA)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
G	d3o2og_	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	Adaptor protein ClpS (YljA)	Adaptor protein ClpS (YljA)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
H	d3o2oh_	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	Adaptor protein ClpS (YljA)	Adaptor protein ClpS (YljA)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	ClpS-like	8032304	3000936	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ClpS-like	8032304	3000936	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ClpS-like	8032304	3000936	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ClpS-like	8032304	3000936	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ClpS-like	8032304	3000936	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ClpS-like	8032304	3000936	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ClpS-like	8032304	3000936	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ClpS-like	8032304	3000936	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	WD40, eIF2A, Beta-prop_WDR5	e3o2oA1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
B	WD40, eIF2A, Beta-prop_WDR5	e3o2oB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
C	WD40, eIF2A, Beta-prop_WDR5	e3o2oC1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
D	WD40, eIF2A, Beta-prop_WDR5	e3o2oD1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
E	WD40, eIF2A, Beta-prop_WDR5	e3o2oE1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
F	WD40, eIF2A, Beta-prop_WDR5	e3o2oF1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
G	WD40, eIF2A, Beta-prop_WDR5	e3o2oG1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
H	WD40, eIF2A, Beta-prop_WDR5	e3o2oH1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)
B	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)
C	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)
D	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)
E	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)
F	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)
G	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)
H	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF02617	ATP-dependent Clp protease adaptor protein ClpS (ClpS)	ATP-dependent Clp protease adaptor protein ClpS	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	ATP-dependent Clp protease adaptor protein ClpS	protein binding binding protein-folding chaperone binding molecular function inhibitor activity molecular function regulator activity	catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process proteolysis response to stimulus response to stress response to heat response to abiotic stimulus response to temperature stimulus	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003769	Adaptor protein ClpS, core	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR014719	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR022935	ATP-dependent Clp protease adaptor protein ClpS	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.