3NQB | pdb_00003nqb

Crystal Structure of Adenine Deaminase from Agrobacterium tumefaciens (str. C 58)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BFer4_13e3nqbB4 A: a/b three-layered sandwichesX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: Fer4_13ECOD (v294.1)
AAmidohydro_1e3nqbA2 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: Amidohydro_1ECOD (v294.1)
ATrypsin,Thrombin_lighte3nqbA3 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Trypsin,Thrombin_lightECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
B3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
A2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
A3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF13382Adenine deaminase C-terminal domain (Adenine_deam_C)Adenine deaminase C-terminal domain- Family
A, B
PF01979Amidohydrolase family (Amidohydro_1)Amidohydrolase familyThis family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisatio ...This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source [2]. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit [3]. Dihydroorotases (EC:3.5.2.3) are also included [4-5].
Domain