3NJA | pdb_00003nja

The crystal structure of the PAS domain of a GGDEF family protein from Chromobacterium violaceum ATCC 12472.

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DF5_F8_type_Ce3njaD1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: F5_F8_type_CECOD (v294.1)
CF5_F8_type_Ce3njaC1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: F5_F8_type_CECOD (v294.1)
BF5_F8_type_Ce3njaB1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: F5_F8_type_CECOD (v294.1)
ATubuline3njaA2 A: a/b three-layered sandwichesX: POZ domainH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: TubulinECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.30.450.20 Alpha Beta 2-Layer Sandwich Beta-Lactamase PAS domainCATH (4.3.0)
D2.10.70.100 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)
C3.30.450.20 Alpha Beta 2-Layer Sandwich Beta-Lactamase PAS domainCATH (4.3.0)
C2.10.70.100 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)
B3.30.450.20 Alpha Beta 2-Layer Sandwich Beta-Lactamase PAS domainCATH (4.3.0)
B2.10.70.100 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)
A3.30.450.20 Alpha Beta 2-Layer Sandwich Beta-Lactamase PAS domainCATH (4.3.0)
A2.10.70.100 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF08447PAS fold (PAS_3)PAS foldThe PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [4]. The PAS fold appears in archaea, eubacteria and eukarya. Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR035965PAS domain superfamilyHomologous Superfamily
A, B, C, D
IPR001610PAC motifRepeat
A, B, C, D
IPR000700PAS-associated, C-terminalDomain
A, B, C, D
IPR000014PAS domainDomain
A, B, C, D
IPR000160GGDEF domainDomain
A, B, C, D
IPR013655PAS fold 3Domain
A, B, C, D
IPR013656PAS fold 4Domain
A, B, C, D
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A, B, C, D
IPR052155Bacterial biofilm regulation/maintenanceFamily
A, B, C, D
IPR029787Nucleotide cyclaseHomologous Superfamily