The crystal structure of the PAS domain of a GGDEF family protein from Chromobacterium violaceum ATCC 12472.
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | PAS_11 | e3njaD1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS_11 | ECOD (1.6) |
| C | PAS_11 | e3njaC1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS_11 | ECOD (1.6) |
| B | PAS_11 | e3njaB1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS_11 | ECOD (1.6) |
| A | PAS_11 | e3njaA2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS_11 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
| D | 2.10.70.100 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
| C | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
| C | 2.10.70.100 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
| B | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
| B | 2.10.70.100 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
| A | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
| A | 2.10.70.100 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR035965 | PAS domain superfamily | Homologous Superfamily | |
| IPR001610 | PAC motif | Repeat | |
| IPR000700 | PAS-associated, C-terminal | Domain | |
| IPR013655 | PAS fold-3 | Domain | |
| IPR000014 | PAS domain | Domain | |
| IPR000160 | GGDEF domain | Domain | |
| IPR013656 | PAS fold-4 | Domain | |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
| IPR052155 | Bacterial biofilm regulation/maintenance | Family | |
| IPR029787 | Nucleotide cyclase | Homologous Superfamily |
