3NCW | pdb_00003ncw

Crystal structure of EHEC O157:H7 intimin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3ncwd1	All beta proteins	Immunoglobulin-like beta-sandwich	Invasin/intimin cell-adhesion fragments	automated matches	automated matches	(Escherichia coli O157:H7 str. TW14359 ) [TaxId: 544404 ],	SCOPe (2.08)
D	d3ncwd2	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	(Escherichia coli O157:H7 str. TW14359 ) [TaxId: 544404 ],	SCOPe (2.08)
C	d3ncwc1	All beta proteins	Immunoglobulin-like beta-sandwich	Invasin/intimin cell-adhesion fragments	automated matches	automated matches	(Escherichia coli O157:H7 str. TW14359 ) [TaxId: 544404 ],	SCOPe (2.08)
C	d3ncwc2	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	(Escherichia coli O157:H7 str. TW14359 ) [TaxId: 544404 ],	SCOPe (2.08)
B	d3ncwb1	All beta proteins	Immunoglobulin-like beta-sandwich	Invasin/intimin cell-adhesion fragments	automated matches	automated matches	(Escherichia coli O157:H7 str. TW14359 ) [TaxId: 544404 ],	SCOPe (2.08)
B	d3ncwb2	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	(Escherichia coli O157:H7 str. TW14359 ) [TaxId: 544404 ],	SCOPe (2.08)
A	d3ncwa1	All beta proteins	Immunoglobulin-like beta-sandwich	Invasin/intimin cell-adhesion fragments	automated matches	automated matches	(Escherichia coli O157:H7 str. TW14359 ) [TaxId: 544404 ],	SCOPe (2.08)
A	d3ncwa2	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	(Escherichia coli O157:H7 str. TW14359 ) [TaxId: 544404 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Big_2	e3ncwD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Big_2	ECOD (1.6)
D	Intimin_C	e3ncwD2	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Intimin_C	ECOD (1.6)
C	Big_2	e3ncwC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Big_2	ECOD (1.6)
C	Intimin_C	e3ncwC2	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Intimin_C	ECOD (1.6)
B	Big_2	e3ncwB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Big_2	ECOD (1.6)
B	Intimin_C	e3ncwB2	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Intimin_C	ECOD (1.6)
A	Big_2	e3ncwA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Big_2	ECOD (1.6)
A	Intimin_C	e3ncwA2	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Intimin_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.40.1080	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
D	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
C	2.60.40.1080	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
C	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
B	2.60.40.1080	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
A	2.60.40.1080	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF07979	Intimin C-type lectin domain (Intimin_C)	Intimin C-type lectin domain	This domain is found at the C-terminus of intimin. Its structure has been solved and shown to have a C-lectin type of structure [1]. Intimin is a bacterial adhesion molecule involved in intimate attachment of enteropathogenic and enterohemorrhagic Es ...	This domain is found at the C-terminus of intimin. Its structure has been solved and shown to have a C-lectin type of structure [1]. Intimin is a bacterial adhesion molecule involved in intimate attachment of enteropathogenic and enterohemorrhagic Escherichia coli to mammalian host cells. Intimin targets the translocated intimin receptor (Tir), which is exported by the bacteria and integrated into the host cell plasma membrane.	Domain
A, B, C, D	PF26182	NUP210 Ig-like domain 5 (Ig_NUP210_5th)	NUP210 Ig-like domain 5	This entry represents the fifth Ig-like domain in NUP210 proteins. NUP210 proteins are membrane glycoproteins that are integral components of the nuclear pore complex. These proteins are essential for the assembly and fusion of nuclear pores, maintai ...	This entry represents the fifth Ig-like domain in NUP210 proteins. NUP210 proteins are membrane glycoproteins that are integral components of the nuclear pore complex. These proteins are essential for the assembly and fusion of nuclear pores, maintaining proper nuclear pore spacing, and ensuring the structural integrity of the nuclear envelope. They are known to form dimers and potentially higher-order oligomers, which may contribute to their functional roles in the nuclear pore complex. NUP210 proteins are composed of multiple immunoglobulin-like (Ig-like) domains that form a ring around the NPC within the NE lumen [1-2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Intimin adherence protein	-	cell adhesion cellular process	cell periphery cell outer membrane cellular anatomical structure external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR038177	Inverse autotransporter, beta-domain superfamily	Homologous Superfamily
A, B, C, D	IPR003535	Intimin/invasin bacterial adhesion mediator protein	Family
A, B, C, D	IPR003344	Big-1 (bacterial Ig-like domain 1) domain	Domain
A, B, C, D	IPR016187	C-type lectin fold	Homologous Superfamily
A, B, C, D	IPR013117	Intimin, C-terminal	Domain
A, B, C, D	IPR003343	Bacterial Ig-like domain, group 2	Domain
A, B, C, D	IPR051715	Intimin/Invasin domain-containing protein	Family
A, B, C, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, B, C, D	IPR024519	Inverse autotransporter, beta-domain	Domain
A, B, C, D	IPR018392	LysM domain	Domain
A, B, C, D	IPR008964	Invasin/intimin cell-adhesion fragments	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.