Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Bvigilin_like_KH_likee3n89B4 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: vigilin_like_KH_likeECOD (1.6)
BEUF08401e3n89B2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: EUF08401ECOD (1.6)
BEUF08400,vigilin_like_KH_likee3n89B3 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: EUF08400,vigilin_like_KH_likeECOD (1.6)
BUNK_F_TYPEe3n89B1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: UNK_F_TYPEECOD (1.6)
AEUF08400e3n89A4 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: EUF08400ECOD (1.6)
Avigilin_like_KH_likee3n89A3 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: vigilin_like_KH_likeECOD (1.6)
AEUF08401e3n89A2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: EUF08401ECOD (1.6)
AKH_1_1e3n89A1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: KH_1_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.30.310.270 Alpha Beta 2-Layer Sandwich TATA-Binding Protein CATH (4.3.0)
B3.30.310.210 Alpha Beta 2-Layer Sandwich TATA-Binding Protein CATH (4.3.0)
A3.30.310.270 Alpha Beta 2-Layer Sandwich TATA-Binding Protein CATH (4.3.0)
A3.30.310.210 Alpha Beta 2-Layer Sandwich TATA-Binding Protein CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF17905GLD-3 4th KH domain (aka KH5) (KH_GLD-3_4th)GLD-3 4th KH domain (aka KH5)This KH domain is found in the C. elegans GLD-3 protein [1]. GLD-3 is a protein required maternally for germline survival and embryogenesis. This domain is known as the KH5 domain based on a prior identification of five KH domains in the GLD-3 protei ...This KH domain is found in the C. elegans GLD-3 protein [1]. GLD-3 is a protein required maternally for germline survival and embryogenesis. This domain is known as the KH5 domain based on a prior identification of five KH domains in the GLD-3 protein [2]. However, based on recent structure predictions using AlphaFold is appears that the KH1 domain is not a KH domain at all. Therefore the 4th KH domain is known as KH5. This is the fourth KH domain of the globular structure unit also formed by KH2, KH3 and KH4 [1]. GLD-3 interacts with the cytoplasmic poly(A)-polymerase GLD-2. The two proteins cooperate to recognize target mRNAs and convert them into a polyadenylated, translationally active state.
Domain
A, B
PF22467GLD-3 3rd KH domain (aka KH4) (KH_GLD-3_3rd)GLD-3 3rd KH domain (aka KH4)This KH domain is found in the C. elegans GLD-3 protein [1]. GLD-3 is a protein required maternally for germline survival and embryogenesis. This domain is known as the KH4 domain based on a prior identification of five KH domains in the GLD-3 protei ...This KH domain is found in the C. elegans GLD-3 protein [1]. GLD-3 is a protein required maternally for germline survival and embryogenesis. This domain is known as the KH4 domain based on a prior identification of five KH domains in the GLD-3 protein [2]. However, based on recent structure predictions using AlphaFold is appears that the KH1 domain is not a KH domain at all. Therefore the 3rd KH domain is known as KH4. This is the third KH domain of the globular structure unit also formed by KH2, KH3 and KH5 [1]. GLD-3 interacts with the cytoplasmic poly(A)-polymerase GLD-2. The two proteins cooperate to recognize target mRNAs and convert them into a polyadenylated, translationally active state.
Domain
A, B
PF21482GLD-3 2nd KH domain (aka KH3) (KH_GLD-3_2nd)GLD-3 2nd KH domain (aka KH3)This KH domain is found in the C. elegans GLD-3 protein [1]. GLD-3 is a protein required maternally for germline survival and embryogenesis. This domain is known as the KH3 domain based on a prior identification of five KH domains in the GLD-3 protei ...This KH domain is found in the C. elegans GLD-3 protein [1]. GLD-3 is a protein required maternally for germline survival and embryogenesis. This domain is known as the KH3 domain based on a prior identification of five KH domains in the GLD-3 protein [2]. However, based on recent structure predictions using AlphaFold is appears that the KH1 domain is not a KH domain at all. Therefore the 2nd KH domain is known as KH3. This is the second KH domain of the globular structure unit also formed by KH2, KH4 and KH5 [1].
Domain
A, B
PF22801GLD-3 1st KH domain (aka KH2) (KH_GLD-3_1st)GLD-3 1st KH domain (aka KH2)This KH domain is found in the C. elegans GLD-3 protein [1]. GLD-3 is a protein required maternally for germline survival and embryogenesis. This domain is known as the KH2 domain based on a prior identification of five KH domains in the GLD-3 protei ...This KH domain is found in the C. elegans GLD-3 protein [1]. GLD-3 is a protein required maternally for germline survival and embryogenesis. This domain is known as the KH2 domain based on a prior identification of five KH domains in the GLD-3 protein [2]. However, based on recent structure predictions using AlphaFold is appears that the KH1 domain is not a KH domain at all. Therefore the 1st KH domain is known as KH2. This is the first KH domain of the globular structure unit also formed by KH3, KH4 and KH5 [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Defective in germ line development protein 3, isoform a