3MTS | pdb_00003mts

Chromo Domain of Human Histone-Lysine N-Methyltransferase SUV39H1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3mtsa1	All beta proteins	SH3-like barrel	Chromo domain-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d3mtsa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3mtsb1	All beta proteins	SH3-like barrel	Chromo domain-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3mtsb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3mtsc1	All beta proteins	SH3-like barrel	Chromo domain-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3mtsc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Chromo domain-like	8063011	3000161	SCOP2B (2022-06-29)
B	SCOP2 Family	Chromo domain	8063010	4000375	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Chromo domain-like	8063011	3000161	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	Chromo domain-like	8063011	3000161	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Chromo	e3mtsA1	A: beta barrels	X: SH3	H: Chromo domain-like (From Topology)	T: Chromo domain-like	F: Chromo	ECOD (1.6)
B	Chromo	e3mtsB1	A: beta barrels	X: SH3	H: Chromo domain-like (From Topology)	T: Chromo domain-like	F: Chromo	ECOD (1.6)
C	Chromo	e3mtsC1	A: beta barrels	X: SH3	H: Chromo domain-like (From Topology)	T: Chromo domain-like	F: Chromo	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
B	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
C	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00385	Chromo (CHRromatin Organisation MOdifier) domain (Chromo)	Chromo (CHRromatin Organisation MOdifier) domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Histone-lysine N-methyltransferase SUV39H1	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding histone H3 methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups protein methyltransferase activity histone modifying activity transferase activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding histone H3 methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups protein methyltransferase activity histone modifying activity transferase activity methyltransferase activity catalytic activity histone methyltransferase activity protein-lysine N-methyltransferase activity histone H3K9 methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity lysine N-methyltransferase activity N-methyltransferase activity histone H3K9 trimethyltransferase activity chromatin binding histone H3K9me2 methyltransferase activity RNA polymerase II transcription regulatory region sequence-specific DNA binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of biological process regulation of cellular process regulation of cellular senescence biological regulation cellular senescence cellular response to nutrient levels response to nutrient levels response to starvation cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of biological process regulation of cellular process regulation of cellular senescence biological regulation cellular senescence cellular response to nutrient levels response to nutrient levels response to starvation cellular response to glucose starvation cellular response to starvation response to decreased oxygen levels cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels cellular response to chemical stimulus response to hypoxia response to chemical response to oxygen levels response to abiotic stimulus methylation metabolic process negative regulation of cellular process negative regulation of biological process negative regulation of cell cycle cell cycle regulation of cell cycle regulation of multicellular organism growth developmental process multicellular organismal process regulation of growth regulation of developmental growth regulation of developmental process developmental growth growth multicellular organism growth regulation of multicellular organismal process regulation of multicellular organismal development bone mineralization animal organ development regulation of biomineral tissue development regulation of bone mineralization tissue development multicellular organism development ossification anatomical structure development biomineral tissue development regulation of ossification regulation of biosynthetic process epigenetic programming of gene expression epigenetic programming in the zygotic pronuclei epigenetic regulation of gene expression regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process cellular component organization regulation of gene expression biosynthetic process chromatin organization chromatin remodeling regulation of macromolecule biosynthetic process cellular component organization or biogenesis macromolecule metabolic process regulation of metabolic process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process regulation of cellular response to stress regulation of response to stress DNA repair DNA metabolic process regulation of DNA repair regulation of response to stimulus regulation of DNA metabolic process cellular developmental process cell differentiation rhythmic process circadian rhythm ribonucleoprotein complex biogenesis rRNA processing cellular component biogenesis ribosome biogenesis RNA processing rRNA metabolic process multicellular organismal-level homeostasis homeostatic process energy homeostasis chordate embryonic development embryo development in utero embryonic development hatching embryo development ending in birth or egg hatching blastocyst hatching organism emergence from protective structure blastocyst development regulation of transcription by glucose determination of adult lifespan nucleolar chromatin organization cellular component assembly rDNA heterochromatin formation heterochromatin formation heterochromatin organization negative regulation of gene expression nucleus organization organelle organization nucleolus organization facultative heterochromatin formation negative regulation of gene expression, epigenetic	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear protein-containing complex eNoSc complex intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear protein-containing complex eNoSc complex intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle chromatin silencing complex nuclear lumen chromatin chromosome heterochromatin condensed nuclear chromosome nuclear chromosome condensed chromosome cell periphery plasma membrane membrane chromosome, centromeric region chromosomal region nucleoplasm cytoplasmic vesicle intracellular vesicle cytoplasm vesicle endomembrane system organelle envelope nuclear envelope nuclear periphery nuclear lamina rDNA heterochromatin

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR007728	Pre-SET domain	Domain
A, B, C	IPR046341	SET domain superfamily	Homologous Superfamily
A, B, C	IPR001214	SET domain	Domain
A, B, C	IPR011381	Histone-lysine N-methyltransferase SUV39H1/2-like	Family
A, B, C	IPR003616	Post-SET domain	Domain
A, B, C	IPR023780	Chromo domain	Domain
A, B, C	IPR050973	Histone-lysine N-methyltransferase, H3 Lys-9 specific	Family
A, B, C	IPR016197	Chromo-like domain superfamily	Homologous Superfamily
A, B, C	IPR023779	Chromo domain, conserved site	Conserved Site
A, B, C	IPR000953	Chromo/chromo shadow domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: O43463	Cell Transformation, Neoplastic malignant mesothelioma osteosarcoma lung cancer primary hyperoxaluria type 1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.