Annotations: 3M0G

CRYSTAL STRUCTURE OF putative farnesyl diphosphate synthase from Rhodobacter capsulatus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3m0gb1	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	Rhodopseudomonas capsulata (Rhodobacter capsulatus ) [TaxId: 1061 ],	SCOPe (2.08)
B	d3m0gb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rhodopseudomonas capsulata (Rhodobacter capsulatus ) [TaxId: 1061 ],	SCOPe (2.08)
A	d3m0ga1	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	Rhodopseudomonas capsulata (Rhodobacter capsulatus ) [TaxId: 1061 ],	SCOPe (2.08)
A	d3m0ga2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rhodopseudomonas capsulata (Rhodobacter capsulatus ) [TaxId: 1061 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Terpenoid synthases	8059005	3001615	SCOP2B (2022-06-29)
A	SCOP2 Family	Isoprenyl diphosphate synthases	8059004	4001453	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Terpenoid synthases	8059005	3001615	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Tachylectin	e3m0gB1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Tachylectin	ECOD (v295.2)
A	SQS_PSY	e3m0gA2	A: alpha arrays	X: DEATH domain	H: PH domain-like	T: PH domain-like	F: SQS_PSY	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)
A	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Farnesyl diphosphate synthase	geranylgeranyl diphosphate synthase activity prenyl diphosphate synthase activity prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity (2E,6E)-farnesyl diphosphate synthase activity	isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process trans, trans-farnesyl diphosphate biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process dimethylallyl diphosphate metabolic process metabolic process cellular process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process trans, trans-farnesyl diphosphate biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process dimethylallyl diphosphate metabolic process metabolic process cellular process phosphorus metabolic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR053378	Prenyl diphosphate synthase	Family
A, B	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
A, B	IPR033749	Polyprenyl synthetase, conserved site	Conserved Site
A, B	IPR000092	Polyprenyl synthetase-like	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.