3LYR | pdb_00003lyr

Human Early B-cell Factor 1 (EBF1) DNA-binding domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	DBD of transcription factor COE1-like	8045568	4004538	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	p53-like transcription factors	8052687	3000758	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RVP	e3lyrA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.3180	Mainly Beta	Sandwich	Immunoglobulin-like	Transcription factor COE1, DNA-binding domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Transcription factor COE1	DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR032200	Transcription factor COE, DNA-binding domain	Domain
A	IPR002909	IPT domain	Domain
A	IPR018350	Transcription factor COE, conserved site	Conserved Site
A	IPR038173	Transcription factor COE, DNA-binding domain superfamily	Homologous Superfamily
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A	IPR003523	Transcription factor COE	Family
A	IPR032201	Transcription factor COE, helix-loop-helix domain	Domain
A	IPR038006	Transcription factor COE, IPT domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9UH73	follicular lymphoma adult acute respiratory distress syndrome breast carcinoma psoriasis Lymphoma, Follicular, Grade 1 malignant ependymoma osteosarcoma attention deficit hyperactivity disorder, inattentive type pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia cystic fibrosis Emery-Dreifuss muscular dystrophy large cell medulloblastoma medulloblastoma non-small cell lung carcinoma androgenetic alopecia follicular lymphoma adult acute respiratory distress syndrome breast carcinoma psoriasis Lymphoma, Follicular, Grade 1 malignant ependymoma osteosarcoma attention deficit hyperactivity disorder, inattentive type pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia cystic fibrosis Emery-Dreifuss muscular dystrophy large cell medulloblastoma medulloblastoma non-small cell lung carcinoma androgenetic alopecia ovarian cancer B-cell chronic lymphocytic leukemia Pick disease tuberculosis breast fibroadenoma Duchenne muscular dystrophy endogenous depression invasive ductal breast carcinoma lung adenocarcinoma nasopharyngeal carcinoma oligodendroglioma atopic eczema pancreatic intraductal papillary-mucinous carcinoma breast cancer primitive neuroectodermal tumor ulcerative colitis ductal breast carcinoma in situ estrogen-receptor negative breast cancer juvenile dermatomyositis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.