3LYD | pdb_00003lyd

Crystal structure of Putative uncharacterized protein from Jonesia denitrificans

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Mog1p/PsbP-like	8090828	3000396	SCOP2B (2022-06-29)
A	SCOP2 Family	LpqN-like	8045511	4004506	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Mog1p/PsbP-like	8090828	3000396	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Lpp-LpqN_1	e3lydB1	A: a+b three layers	X: Mog1p/PsbP-like	H: Mog1p/PsbP-like (From Topology)	T: Mog1p/PsbP-like	F: Lpp-LpqN_1	ECOD (1.6)
A	Lpp-LpqN_1	e3lydA1	A: a+b three layers	X: Mog1p/PsbP-like	H: Mog1p/PsbP-like (From Topology)	T: Mog1p/PsbP-like	F: Lpp-LpqN_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (4.3.0)
A	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF10738	Probable lipoprotein LpqN (Lpp-LpqN)	Probable lipoprotein LpqN	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Uncharacterized protein	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR019674	Lipoprotein LpqN/LpqT-like	Family
A, B	IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.