3LSO | pdb_00003lso

Crystal structure of Putative membrane anchored protein from Corynebacterium diphtheriae

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Bacterial adhesin-like	8092341	3000723	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Leukocidin-like	8092339	3000256	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	E set domains	8092337	3000070	SCOP2B (2022-06-29)
A	SCOP2 Family	DIP2116 middle domain-like	8045893	4004747	SCOP2 (2022-06-29)
A	SCOP2 Family	DIP2116 N-terminal domain-like	8092338	4007768	SCOP2 (2022-06-29)
A	SCOP2 Family	DIP2116 C-terminal domain-like	8092340	4007769	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	E set domains	8092337	3000070	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Leukocidin-like	8092339	3000256	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Bacterial adhesin-like	8092341	3000723	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e3lsoB7	A: Fusion glycoprotein F2	X: Fusion glycoprotein F2	H: Fusion glycoprotein F2	T: SpaA	F:	ECOD (20:10:01)
A		e3lsoA1	A: Immunoglobulin-like beta-sandwich	X: RNA-binding domain, RBD	H: RNA-binding domain, RBD	T: DIP2116-like_N	F:	ECOD (20:10:01)
A		e3lsoA2	A: Immunoglobulin-like beta-sandwich	X: RNA-binding domain, RBD	H: RNA-binding domain, RBD	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.40.2270	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	2.60.40.2260	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.2270	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	2.60.40.2260	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF22089	DIP2116-like, N-terminal domain (DIP2116-like_N)	DIP2116-like, N-terminal domain	This domain is found at the N-terminal end of the putative membrane anchored protein DIP2116 from Corynebacterium diphtheriae (Swiss:Q6NEZ3). It shows an immunoglobulin-like fold.	Domain
A	PF22089	DIP2116-like, N-terminal domain (DIP2116-like_N)	DIP2116-like, N-terminal domain	This domain is found at the N-terminal end of the putative membrane anchored protein DIP2116 from Corynebacterium diphtheriae (Swiss:Q6NEZ3). It shows an immunoglobulin-like fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Putative membrane anchored protein	-	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-
A	Putative membrane anchored protein	-	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B	IPR054313	DIP2116-like, N-terminal domain	Domain
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR054313	DIP2116-like, N-terminal domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	MLZ	Parent Component: LYS RESID: AA0076 PSI-MOD : N6-methyl-L-lysine MOD:00085
B	MSE	Parent Component: MET RESID: AA0076
A	MLZ	Parent Component: LYS RESID: AA0076 , AA0076 PSI-MOD : N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085
A	MSE	Parent Component: MET RESID: AA0076 , AA0076

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.