Annotations: 3LME

Structure of probable translation initiation inhibitor from (RPA2473) from Rhodopseudomonas palustris

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d3lmel1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
L	d3lmel2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
K	d3lmek1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
K	d3lmek2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
J	d3lmej1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
J	d3lmej2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
I	d3lmei1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
I	d3lmei2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
H	d3lmeh1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
H	d3lmeh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
G	d3lmeg1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
G	d3lmeg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
F	d3lmef1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
F	d3lmef2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
E	d3lmee1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
E	d3lmee2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
D	d3lmed1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
D	d3lmed2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
C	d3lmec1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
C	d3lmec2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
B	d3lmeb1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
B	d3lmeb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
A	d3lmea1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)
A	d3lmea2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rhodopseudomonas palustris ) [TaxId: 1076 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	YjgF-like	8059853	3001733	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	YjgF-like	8059853	3001733	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	YjgF-like	8059853	3001733	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	YjgF-like	8059853	3001733	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	YjgF-like	8059853	3001733	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	YjgF-like	8059853	3001733	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	YjgF-like	8059853	3001733	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YjgF-like	8059853	3001733	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YjgF-like	8059853	3001733	SCOP2B (2022-06-29)
C	SCOP2 Family	YjgF/L-PSP	8059852	4001510	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	YjgF-like	8059853	3001733	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	YjgF-like	8059853	3001733	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	YjgF-like	8059853	3001733	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Tachylectin	e3lmeL1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Tachylectin	ECOD (v295.2)
K	Tachylectin	e3lmeK1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Tachylectin	ECOD (v295.2)
J	Tachylectin	e3lmeJ1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Tachylectin	ECOD (v295.2)
I	Tachylectin	e3lmeI1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Tachylectin	ECOD (v295.2)
H	Tachylectin	e3lmeH1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Tachylectin	ECOD (v295.2)
G	Tachylectin	e3lmeG1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Tachylectin	ECOD (v295.2)
F	Tachylectin	e3lmeF1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Tachylectin	ECOD (v295.2)
E	Tachylectin	e3lmeE1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Tachylectin	ECOD (v295.2)
D	Tachylectin	e3lmeD1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Tachylectin	ECOD (v295.2)
C	Tachylectin	e3lmeC1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Tachylectin	ECOD (v295.2)
B	Tachylectin	e3lmeB1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Tachylectin	ECOD (v295.2)
A	ecTbetaR2	e3lmeA1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: HTH	T: winged helix domain	F: ecTbetaR2	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
K	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
J	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
I	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
H	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
G	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
F	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
E	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
D	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
C	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
B	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
A	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF01042	Endoribonuclease L-PSP (Ribonuc_L-PSP)	Endoribonuclease L-PSP	Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. Yjg ...	Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. YjgF (renamed RidA) family members are enamine/imine deaminases. They hydrolyze reactive intermediates released by PLP-dependent enzymes, including threonine dehydratase [5]. YjgF also prevents inhibition of transaminase B (IlvE) in Salmonella [4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Possible translation initiation inhibitor	hydrolase activity deaminase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR035959	RutC-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR006175	YjgF/YER057c/UK114 family	Family

3LME | pdb_00003lme

Structure of probable translation initiation inhibitor from (RPA2473) from Rhodopseudomonas palustris

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage