3LL7 | pdb_00003ll7

Crystal structure of putative methyltransferase PG_1098 from Porphyromonas gingivalis W83

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PG_1098_Fer	e3ll7A3	A: alpha bundles	X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase	T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PG_1098_Fer	ECOD (develop294)
A	Thump_like	e3ll7A4	A: alpha bundles	X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase	T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: Thump_like	ECOD (develop294)
A	PG_1098_N	e3ll7A1	A: alpha bundles	X: N-terminal domain in putative methyltransferase PG_1098	H: N-terminal domain in putative methyltransferase PG_1098	T: N-terminal domain in putative methyltransferase PG_1098	F: PG_1098_N	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.1110	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Methyltransferase PG1098, N-terminal domain	CATH (4.3.0)
A	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF22013	PG_1098 ferredoxin-like domain (PG_1098_Fer)	PG_1098 ferredoxin-like domain	This entry represents a ferredoxin-like domain found in a group of poorly characterised sequences, including the putative methyltransferase PG_1098 from Porphyromonas gingivalis (Swiss:Q7MVG6, PDB:3ll7). Members of this entry contain a THUMP-like dom ...	This entry represents a ferredoxin-like domain found in a group of poorly characterised sequences, including the putative methyltransferase PG_1098 from Porphyromonas gingivalis (Swiss:Q7MVG6, PDB:3ll7). Members of this entry contain a THUMP-like domain at the C-terminal (Pfam:PF18096), following this domain.	Domain
A	PF18096	THUMP domain-like (Thump_like)	THUMP domain-like	This is a domain of unknown function found in bacteria.	Domain
A	PF21911	N-terminal domain in putative methyltransferase PG_1098 (PG_1098_N)	N-terminal domain in putative methyltransferase PG_1098	This small alpha-helical domain is found at the N-terminus of putative methyltransferase proteins.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR054168	PG_1098 ferredoxin-like domain	Domain
A	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A	IPR041497	THUMP-like domain	Domain
A	IPR054111	PG_1098, N-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.