Annotations: 3L8R

The crystal structure of PtcA from S. mutans

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d3l8rh_	All alpha proteins	Spectrin repeat-like	Enzyme IIa from lactose specific PTS, IIa-lac	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
G	d3l8rg_	All alpha proteins	Spectrin repeat-like	Enzyme IIa from lactose specific PTS, IIa-lac	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
F	d3l8rf_	All alpha proteins	Spectrin repeat-like	Enzyme IIa from lactose specific PTS, IIa-lac	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
E	d3l8re_	All alpha proteins	Spectrin repeat-like	Enzyme IIa from lactose specific PTS, IIa-lac	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
D	d3l8rd_	All alpha proteins	Spectrin repeat-like	Enzyme IIa from lactose specific PTS, IIa-lac	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
C	d3l8rc_	All alpha proteins	Spectrin repeat-like	Enzyme IIa from lactose specific PTS, IIa-lac	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
B	d3l8rb_	All alpha proteins	Spectrin repeat-like	Enzyme IIa from lactose specific PTS, IIa-lac	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
A	d3l8ra_	All alpha proteins	Spectrin repeat-like	Enzyme IIa from lactose specific PTS, IIa-lac	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Enzyme IIa from lactose specific PTS, IIa-lac	8078907	3001316	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Enzyme IIa from lactose specific PTS, IIa-lac	8078907	3001316	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Enzyme IIa from lactose specific PTS, IIa-lac	8078907	3001316	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Enzyme IIa from lactose specific PTS, IIa-lac	8078907	3001316	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Enzyme IIa from lactose specific PTS, IIa-lac	8078907	3001316	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Enzyme IIa from lactose specific PTS, IIa-lac	8078907	3001316	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Enzyme IIa from lactose specific PTS, IIa-lac	8078907	3001316	SCOP2B (2022-06-29)
A	SCOP2 Family	Enzyme IIa from lactose specific PTS, IIa-lac	8078906	4000774	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Enzyme IIa from lactose specific PTS, IIa-lac	8078907	3001316	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	COesterase, BD-FAE	e3l8rH1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: COesterase, BD-FAE	ECOD (v294.1)
G	COesterase, BD-FAE	e3l8rG1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: COesterase, BD-FAE	ECOD (v294.1)
F	COesterase, BD-FAE	e3l8rF1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: COesterase, BD-FAE	ECOD (v294.1)
E	COesterase, BD-FAE	e3l8rE1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: COesterase, BD-FAE	ECOD (v294.1)
D	COesterase, BD-FAE	e3l8rD1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: COesterase, BD-FAE	ECOD (v294.1)
C	COesterase, BD-FAE	e3l8rC1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: COesterase, BD-FAE	ECOD (v294.1)
B	COesterase, BD-FAE	e3l8rB1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: COesterase, BD-FAE	ECOD (v294.1)
A	PAS_3	e3l8rA1	A: a/b three-layered sandwiches	X: Profilin-like	H: sensor domains	T: sensor domains	F: PAS_3	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.20.58.80	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
G	1.20.58.80	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
F	1.20.58.80	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
E	1.20.58.80	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
D	1.20.58.80	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
C	1.20.58.80	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
B	1.20.58.80	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
A	1.20.58.80	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit (PTS_IIA)	PTS system, Lactose/Cellobiose specific IIA subunit	The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structural ...	The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion [1]. Separation into subunits is thought to occur after phosphorylation.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Putative PTS system, cellobiose-specific IIA component	cation binding ion binding binding metal ion binding small molecule binding transferase activity catalytic activity	import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036542	Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003188	Phosphotransferase system, lactose/cellobiose-type IIA subunit	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.