3KZS | pdb_00003kzs

Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092269	3001528	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	(Trans)glycosidases	8092270	3000313	SCOP2B (2022-06-29)
C	SCOP2 Family	BVU_2644 C-terminal domain-like	8048076	4005945	SCOP2 (2022-06-29)
C	SCOP2 Family	GH5 catalytic domain-like	8048375	4006076	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Glycosyl hydrolase domain-like	8092269	3001528	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	(Trans)glycosidases	8092270	3000313	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092269	3001528	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	(Trans)glycosidases	8092270	3000313	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092269	3001528	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	(Trans)glycosidases	8092270	3000313	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Glyco_trans_1_4	e3kzsD1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Glyco_trans_1_4	ECOD (develop294)
C	Glyco_trans_1_4	e3kzsC1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Glyco_trans_1_4	ECOD (develop294)
B	Glyco_trans_1_4	e3kzsB1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Glyco_trans_1_4	ECOD (develop294)
A	DUF4038	e3kzsA1	A: alpha bundles	X: N-terminal beta-sandwich domain in anthrax protective antigen	H: Macro domain-like	T: Macro domain-like	F: DUF4038	ECOD (develop294)
A		e3kzsA2	A: alpha bundles	X: N-terminal beta-sandwich domain in anthrax protective antigen	H: Macro domain-like	T: Macro domain-like	F:	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
C	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
B	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
A	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF12904	Putative collagen-binding domain of a collagenase (Collagen_bind_2)	Putative collagen-binding domain of a collagenase	This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. It is the C-terminal part of the PDB:3kzs structure determined from Swiss:Q8A905 (information derived from TOPSAN).	Domain
A, B, C, D	PF13204	Apiosidase-like, catalytic domain (Apiosidase)	Apiosidase-like, catalytic domain	This entry represents the catalytic domain of endo-apiosidase (Swiss:Q8A905) and related proteins, some of which form part of the rhamnogalacturonan-II (RG-II) degradome. This domain adopts an (alpha-beta)8-barrel that harbours the aspartate and glut ...	This entry represents the catalytic domain of endo-apiosidase (Swiss:Q8A905) and related proteins, some of which form part of the rhamnogalacturonan-II (RG-II) degradome. This domain adopts an (alpha-beta)8-barrel that harbours the aspartate and glutamate residues essential for the catalytic activity.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR024749	Putative collagen-binding domain	Domain
A, B, C, D	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B, C, D	IPR025277	Apiosidase-like, catalytic domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.