3KZ4 | pdb_00003kz4

Crystal Structure of the Rotavirus Double Layered Particle


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyReovirus inner layer core protein p3 8094214 3001935 SCOP2B (2022-06-29)
BSCOP2 FamilyRotavirus core (VP2) 8046843 4005324 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyReovirus inner layer core protein p3 8094214 3001935 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARota_VP2e3kz4A1 A: a/b three-layered sandwichesX: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenaseH: Inner layer core protein p3-relatedT: Inner layer core protein p3-relatedF: Rota_VP2ECOD (v294.1)
BPGIe3kz4B1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Ribonuclease H-likeT: Ribonuclease H-likeF: PGIECOD (v294.1)
CRVPe3kz4C1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
DRVPe3kz4D1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
ERVPe3kz4E1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
FRVPe3kz4F1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
GRVPe3kz4G1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
HRVPe3kz4H1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
IRVPe3kz4I1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
JRVPe3kz4J1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
KRVPe3kz4K1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
LRVPe3kz4L1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
MRVPe3kz4M1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
NRVPe3kz4N1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
ORVPe3kz4O1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
C2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
D2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
E1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
E2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
F1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
F2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
G1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
G2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
H1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
H2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
I1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
I2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
J1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
J2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
K1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
K2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
L1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
L2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
M1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
M2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
N1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
N2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
O1.10.1350.10 Mainly Alpha Orthogonal Bundle Viral capsid alpha domain Viral capsid alpha domainCATH (4.3.0)
O2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR007779Rotavirus VP2Family
C, D, E, F, G
IPR001385Rotavirus A/C, major capsid protein VP6Family
C, D, E, F, G
IPR008935Virus capsid protein, alpha-helicalHomologous Superfamily
C, D, E, F, G
IPR008980Viral capsid/haemagglutinin proteinHomologous Superfamily