3KMI | pdb_00003kmi

Crystal structure of putative membrane protein from Clostridium difficile 630

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Putative aromatic acid exporter C-terminal domain-like	8046903	4005359	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PhoU-like	8104115	3000081	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PhoU-like	8104116	3000081	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	PhoU-like	8104115	3000081	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PhoU-like	8104116	3000081	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ArAE_1_C	e3kmiA1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: PhoU-like (Pfam 01895)	T: PhoU-like (Pfam 01895)	F: ArAE_1_C	ECOD (v294.1)
B	USP7_ICP0_bdg	e3kmiB1	A: a/b three-layered sandwiches	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: USP7_ICP0_bdg	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.120.940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Putative aromatic acid exporter, C-terminal domain	CATH (4.3.0)
B	1.20.120.940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Putative aromatic acid exporter, C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF11728	Putative aromatic acid exporter C-terminal domain (ArAE_1_C)	Putative aromatic acid exporter C-terminal domain	This region is a presumed intracellular domain found in a set of bacterial presumed transporter proteins. The region is about 160 amino acids in length.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative membrane protein COG4129	-	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR052984	UPF0421	Family
A, B	IPR021062	Putative aromatic acid exporter, C-terminal	Domain
A, B	IPR038323	Putative aromatic acid exporter, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR010343	Aromatic acid exporter family member 1	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.