3KDS | pdb_00003kds

apo-FtsH crystal structure

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth G]	d3kdsg2	All alpha proteins	FtsH protease domain-like	FtsH protease domain-like	FtsH protease domain-like	automated matches	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
C [auth G]	d3kdsg1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Extended AAA-ATPase domain	AAA domain of cell division protein FtsH	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
B [auth F]	d3kdsf2	All alpha proteins	FtsH protease domain-like	FtsH protease domain-like	FtsH protease domain-like	automated matches	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
B [auth F]	d3kdsf1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Extended AAA-ATPase domain	AAA domain of cell division protein FtsH	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
A [auth E]	d3kdse2	All alpha proteins	FtsH protease domain-like	FtsH protease domain-like	FtsH protease domain-like	automated matches	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
A [auth E]	d3kdse1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Extended AAA-ATPase domain	AAA domain of cell division protein FtsH	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth G]	SCOP2B Superfamily	FtsH protease domain-like	8038717	3002004	SCOP2B (2022-06-29)
C [auth G]	SCOP2B Superfamily	RecA-like P-loop NTPases	8038719	3002019	SCOP2B (2022-06-29)
C [auth G]	SCOP2B Superfamily	DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like	8104159	3002834	SCOP2B (2022-06-29)
B [auth F]	SCOP2B Superfamily	RecA-like P-loop NTPases	8038719	3002019	SCOP2B (2022-06-29)
B [auth F]	SCOP2B Superfamily	FtsH protease domain-like	8038717	3002004	SCOP2B (2022-06-29)
B [auth F]	SCOP2B Superfamily	DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like	8104159	3002834	SCOP2B (2022-06-29)
A [auth E]	SCOP2B Superfamily	RecA-like P-loop NTPases	8038719	3002019	SCOP2B (2022-06-29)
A [auth E]	SCOP2B Superfamily	DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like	8104159	3002834	SCOP2B (2022-06-29)
A [auth E]	SCOP2B Superfamily	FtsH protease domain-like	8038717	3002004	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth G]	adh_short	e3kdsG1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
B [auth F]	adh_short	e3kdsF1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
A [auth E]	adh_short_C2	e3kdsE1	A: a/b three-layered sandwiches	X: Cystatin-like	H: NTF2-like	T: NTF2-like	F: adh_short_C2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth G]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
C [auth G]	1.10.8.60	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
C [auth G]	1.20.58.760	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
B [auth F]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
B [auth F]	1.10.8.60	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
B [auth F]	1.20.58.760	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
A [auth E]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A [auth E]	1.10.8.60	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
A [auth E]	1.20.58.760	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth F], C [auth G]	PF17862	AAA+ lid domain (AAA_lid_3)	AAA+ lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.	Domain
A [auth E], B [auth F], C [auth G]	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
A [auth E], B [auth F], C [auth G]	PF01434	Peptidase family M41 (Peptidase_M41)	Peptidase family M41		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], B [auth F], C [auth G]	Cell division protein FtsH	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides ATP-dependent activity cation binding transition metal ion binding zinc ion binding metal ion binding ATP-dependent peptidase activity identical protein binding protein binding	catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process proteolysis	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], B [auth F], C [auth G]	IPR000642	Peptidase M41	Domain
A [auth E], B [auth F], C [auth G]	IPR037219	Peptidase M41-like	Homologous Superfamily
A [auth E], B [auth F], C [auth G]	IPR041569	AAA ATPase, AAA+ lid domain	Domain
A [auth E], B [auth F], C [auth G]	IPR011546	Peptidase M41, FtsH extracellular	Domain
A [auth E], B [auth F], C [auth G]	IPR003960	ATPase, AAA-type, conserved site	Conserved Site
A [auth E], B [auth F], C [auth G]	IPR003593	AAA+ ATPase domain	Domain
A [auth E], B [auth F], C [auth G]	IPR005936	ATP-dependent zinc metalloprotease, FtsH	Family
A [auth E], B [auth F], C [auth G]	IPR003959	ATPase, AAA-type, core	Domain
A [auth E], B [auth F], C [auth G]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth E], B [auth F], C [auth G]	OPM	Transmembrane	Alpha-helical polytopic	AAA-ATPase superfamily, transmembrane	FtsH zinc metalloprotease

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth E], B [auth F], C [auth G]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Membrane-Bound Metalloproteases	apo-FtsH ATP-dependent metalloprotease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.