3KD8 | pdb_00003kd8

Cofactor-Independent Phosphoglycerate mutase from Thermoplasma Acidophilum DSM 1728

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Archaeal 2, 3-bisphosphoglycerate-independent phosphoglycerate mutase	8051598	4007429	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Alkaline phosphatase-like	8055760	3001353	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Archaeal 2, 3-bisphosphoglycerate-independent phosphoglycerate mutase, insert domain	8055765	3002302	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Alkaline phosphatase-like	8055760	3001353	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Alkaline phosphatase-like	8055760	3001353	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Archaeal 2, 3-bisphosphoglycerate-independent phosphoglycerate mutase, insert domain	8055765	3002302	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DNA_methylase	e3kd8B2	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: DNA_methylase	ECOD (v294.1)
B	Thymidylat_synt	e3kd8B1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)
A	adh_short	e3kd8A1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
A	Thymidylat_synt	e3kd8A2	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	CATH (4.3.0)
A	3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF10143	2,3-bisphosphoglycerate-independent phosphoglycerate mutase (PhosphMutase)	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	-	Family
A, B	PF01676	Metalloenzyme superfamily (Metalloenzyme)	Metalloenzyme superfamily	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	isomerase activity phosphoglycerate mutase activity intramolecular phosphotransferase activity catalytic activity intramolecular transferase activity cation binding ion binding binding metal ion binding small molecule binding	ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process nucleoside phosphate catabolic process organic acid metabolic process nucleobase-containing compound metabolic process glycolytic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process nucleoside phosphate catabolic process organic acid metabolic process nucleobase-containing compound metabolic process glycolytic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process purine ribonucleotide catabolic process phosphorus metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyruvate metabolic process purine nucleoside diphosphate metabolic process primary metabolic process purine-containing compound catabolic process nucleotide metabolic process nucleobase-containing compound catabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process metabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration catabolic process ATP metabolic process energy derivation by oxidation of organic compounds purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate metabolic process carbohydrate derivative catabolic process ADP catabolic process carboxylic acid metabolic process generation of precursor metabolites and energy purine-containing compound metabolic process ADP metabolic process organophosphate metabolic process purine ribonucleoside diphosphate metabolic process cellular process purine ribonucleoside diphosphate catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR023665	2,3-bisphosphoglycerate-independent phosphoglycerate mutase, prokaryotes	Family
A, B	IPR042253	2,3-bisphosphoglycerate-independent phosphoglycerate mutase superfamily	Homologous Superfamily
A, B	IPR006124	Metalloenzyme	Domain
A, B	IPR017850	Alkaline-phosphatase-like, core domain superfamily	Homologous Superfamily
A, B	IPR004456	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.