3K94 | pdb_00003k94

Crystal Structure of Thiamin pyrophosphokinase from Geobacillus thermodenitrificans, Northeast Structural Genomics Consortium Target GtR2

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TPK_B1_binding	e3k94A2	A: beta sandwiches	X: jelly-roll	H: Thiamin pyrophosphokinase, substrate-binding domain (From Topology)	T: Thiamin pyrophosphokinase, substrate-binding domain	F: TPK_B1_binding	ECOD (1.6)
A	TPK_catalytic	e3k94A1	A: a/b three-layered sandwiches	X: Thiamin pyrophosphokinase, catalytic domain (From Topology)	H: Thiamin pyrophosphokinase, catalytic domain (From Topology)	T: Thiamin pyrophosphokinase, catalytic domain	F: TPK_catalytic	ECOD (1.6)
B	TPK_B1_binding	e3k94B1	A: beta sandwiches	X: jelly-roll	H: Thiamin pyrophosphokinase, substrate-binding domain (From Topology)	T: Thiamin pyrophosphokinase, substrate-binding domain	F: TPK_B1_binding	ECOD (1.6)
B	TPK_catalytic	e3k94B2	A: a/b three-layered sandwiches	X: Thiamin pyrophosphokinase, catalytic domain (From Topology)	H: Thiamin pyrophosphokinase, catalytic domain (From Topology)	T: Thiamin pyrophosphokinase, catalytic domain	F: TPK_catalytic	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.10240	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Thiamin pyrophosphokinase, catalytic domain	CATH (4.3.0)
B	3.40.50.10240	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Thiamin pyrophosphokinase, catalytic domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Thiamin pyrophosphokinase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cation binding vitamin binding thiamine binding alcohol binding sulfur compound binding diphosphotransferase activity thiamine diphosphokinase activity	pyrimidine-containing compound metabolic process thiamine-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process alcohol metabolic process small molecule metabolic process thiamine metabolic process primary alcohol metabolic process water-soluble vitamin biosynthetic process small molecule biosynthetic process vitamin biosynthetic process vitamin metabolic process sulfur compound biosynthetic process pyrimidine-containing compound metabolic process thiamine-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process alcohol metabolic process small molecule metabolic process thiamine metabolic process primary alcohol metabolic process water-soluble vitamin biosynthetic process small molecule biosynthetic process vitamin biosynthetic process vitamin metabolic process sulfur compound biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process thiamine diphosphate metabolic process pyrimidine-containing compound biosynthetic process phosphorus metabolic process thiamine diphosphate biosynthetic process thiamine-containing compound biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036759	Thiamin pyrophosphokinase, catalytic domain superfamily	Homologous Superfamily
A, B	IPR053149	Thiamine pyrophosphokinase	Family
A, B	IPR036371	Thiamin pyrophosphokinase, thiamin-binding domain superfamily	Homologous Superfamily
A, B	IPR006282	Thiamin pyrophosphokinase	Family
A, B	IPR007373	Thiamin pyrophosphokinase, thiamin-binding domain	Domain
A, B	IPR007371	Thiamin pyrophosphokinase, catalytic domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B	CSO	Parent Component: CYS RESID: AA0205 PSI-MOD : L-cysteine sulfenic acid MOD:00210
A, B	MSE	Parent Component: MET RESID: AA0205

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.