3K6A | pdb_00003k6a

Crystal structure of molybdenum cofactor biosynthesis protein mog from shewanella oneidensis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d3k6af_	Alpha and beta proteins (a/b)	Molybdenum cofactor biosynthesis proteins	Molybdenum cofactor biosynthesis proteins	MogA-like	MogA	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)
E	d3k6ae_	Alpha and beta proteins (a/b)	Molybdenum cofactor biosynthesis proteins	Molybdenum cofactor biosynthesis proteins	MogA-like	MogA	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)
D	d3k6ad_	Alpha and beta proteins (a/b)	Molybdenum cofactor biosynthesis proteins	Molybdenum cofactor biosynthesis proteins	MogA-like	MogA	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)
C	d3k6ac_	Alpha and beta proteins (a/b)	Molybdenum cofactor biosynthesis proteins	Molybdenum cofactor biosynthesis proteins	MogA-like	MogA	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)
B	d3k6ab_	Alpha and beta proteins (a/b)	Molybdenum cofactor biosynthesis proteins	Molybdenum cofactor biosynthesis proteins	MogA-like	MogA	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)
A	d3k6aa1	Alpha and beta proteins (a/b)	Molybdenum cofactor biosynthesis proteins	Molybdenum cofactor biosynthesis proteins	MogA-like	MogA	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)
A	d3k6aa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Molybdenum cofactor biosynthesis proteins	8040642	3000702	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Molybdenum cofactor biosynthesis proteins	8040642	3000702	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Molybdenum cofactor biosynthesis proteins	8040642	3000702	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Molybdenum cofactor biosynthesis proteins	8040642	3000702	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Molybdenum cofactor biosynthesis proteins	8040642	3000702	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Molybdenum cofactor biosynthesis proteins	8040642	3000702	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	PDEase_I	e3k6aF1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (v294.1)
E	PDEase_I	e3k6aE1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (v294.1)
D	PDEase_I	e3k6aD1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (v294.1)
C	PDEase_I	e3k6aC1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (v294.1)
B	PDEase_I	e3k6aB1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (v294.1)
A	TIR	e3k6aA1	A: a/b three-layered sandwiches	X: Cystatin-like	H: Cupredoxin-related	T: Cupredoxin-related	F: TIR	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.980.10	Alpha Beta	3-Layer(aba) Sandwich	Molybdenum Cofactor Biosythetic Enzyme	Chain A	CATH (4.3.0)
E	3.40.980.10	Alpha Beta	3-Layer(aba) Sandwich	Molybdenum Cofactor Biosythetic Enzyme	Chain A	CATH (4.3.0)
D	3.40.980.10	Alpha Beta	3-Layer(aba) Sandwich	Molybdenum Cofactor Biosythetic Enzyme	Chain A	CATH (4.3.0)
C	3.40.980.10	Alpha Beta	3-Layer(aba) Sandwich	Molybdenum Cofactor Biosythetic Enzyme	Chain A	CATH (4.3.0)
B	3.40.980.10	Alpha Beta	3-Layer(aba) Sandwich	Molybdenum Cofactor Biosythetic Enzyme	Chain A	CATH (4.3.0)
A	3.40.980.10	Alpha Beta	3-Layer(aba) Sandwich	Molybdenum Cofactor Biosythetic Enzyme	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00994	Probable molybdopterin binding domain (MoCF_biosynth)	Probable molybdopterin binding domain	This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyr ...	This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Molybdenum cofactor biosynthesis protein Mog	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding adenylyltransferase activity molybdopterin adenylyltransferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cation binding metal ion binding	primary metabolic process molybdopterin cofactor biosynthetic process prosthetic group metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process molybdopterin cofactor metabolic process phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process phosphorus metabolic process Mo-molybdopterin cofactor biosynthetic process primary metabolic process molybdopterin cofactor biosynthetic process prosthetic group metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process molybdopterin cofactor metabolic process phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process phosphorus metabolic process Mo-molybdopterin cofactor biosynthetic process Mo-molybdopterin cofactor metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR051920	Molybdopterin Adenylyltransferase/MoaC-Related	Family
A, B, C, D, E A, B, C, D, E, F	IPR036425	MoaB/Mog-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR008284	Molybdenum cofactor biosynthesis, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR001453	MoaB/Mog domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.