3K2C | pdb_00003k2c

Crystal structure of peptidyl-prolyl cis-trans isomerase from Encephalitozoon cuniculi at 1.9 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3k2cd1	All beta proteins	Cyclophilin-like	Cyclophilin-like	Cyclophilin (peptidylprolyl isomerase)	automated matches	Microsporidian parasite (Encephalitozoon cuniculi ) [TaxId: 6035 ],	SCOPe (2.08)
D	d3k2cd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Microsporidian parasite (Encephalitozoon cuniculi ) [TaxId: 6035 ],	SCOPe (2.08)
C	d3k2cc1	All beta proteins	Cyclophilin-like	Cyclophilin-like	Cyclophilin (peptidylprolyl isomerase)	automated matches	Microsporidian parasite (Encephalitozoon cuniculi ) [TaxId: 6035 ],	SCOPe (2.08)
C	d3k2cc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Microsporidian parasite (Encephalitozoon cuniculi ) [TaxId: 6035 ],	SCOPe (2.08)
B	d3k2cb1	All beta proteins	Cyclophilin-like	Cyclophilin-like	Cyclophilin (peptidylprolyl isomerase)	automated matches	Microsporidian parasite (Encephalitozoon cuniculi ) [TaxId: 6035 ],	SCOPe (2.08)
B	d3k2cb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Microsporidian parasite (Encephalitozoon cuniculi ) [TaxId: 6035 ],	SCOPe (2.08)
A	d3k2ca1	All beta proteins	Cyclophilin-like	Cyclophilin-like	Cyclophilin (peptidylprolyl isomerase)	automated matches	Microsporidian parasite (Encephalitozoon cuniculi ) [TaxId: 6035 ],	SCOPe (2.08)
A	d3k2ca2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Microsporidian parasite (Encephalitozoon cuniculi ) [TaxId: 6035 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Cyclophilin-like	8065075	3000168	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cyclophilin-like	8065075	3000168	SCOP2B (2022-06-29)
B	SCOP2 Family	Cyclophilin peptidylprolyl isomerase-like	8065074	4000390	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Cyclophilin-like	8065075	3000168	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Cyclophilin-like	8065075	3000168	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PDEase_I	e3k2cD1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (v294.1)
C	PDEase_I	e3k2cC1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (v294.1)
B	PDEase_I	e3k2cB1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (v294.1)
A	PTS_IIA	e3k2cA1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: Enzyme IIa from lactose specific PTS, IIa-lac	T: Enzyme IIa from lactose specific PTS, IIa-lac	F: PTS_IIA	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.40.100.10	Mainly Beta	Beta Barrel	Cyclophilin	Cyclophilin-like	CATH (4.3.0)
C	2.40.100.10	Mainly Beta	Beta Barrel	Cyclophilin	Cyclophilin-like	CATH (4.3.0)
B	2.40.100.10	Mainly Beta	Beta Barrel	Cyclophilin	Cyclophilin-like	CATH (4.3.0)
A	2.40.100.10	Mainly Beta	Beta Barrel	Cyclophilin	Cyclophilin-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...	The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Peptidyl-prolyl cis-trans isomerase	binding cyclosporin A binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity	protein folding biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR029000	Cyclophilin-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR024936	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	Family
A, B, C, D	IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Domain
A, B, C, D	IPR020892	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.