3JCP | pdb_00003jcp

Structure of yeast 26S proteasome in M2 state derived from Titan dataset

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
KA [auth b]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064048 3000131 SCOP2B (2022-06-29)
K [auth B]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064048 3000131 SCOP2B (2022-06-29)
J [auth A]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036842 3000131 SCOP2B (2022-06-29)
JA [auth a]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036842 3000131 SCOP2B (2022-06-29)
G [auth 7]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079504 3000131 SCOP2B (2022-06-29)
UA [auth l]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079504 3000131 SCOP2B (2022-06-29)
GA [auth X]SCOP2B SuperfamilyPH domain-like 8093403 3000134 SCOP2B (2022-06-29)
C [auth 3]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036787 3000131 SCOP2B (2022-06-29)
QA [auth h]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036787 3000131 SCOP2B (2022-06-29)
EA [auth V]SCOP2B SuperfamilyJAB1/MPN domain-like 8053248 3001105 SCOP2B (2022-06-29)
DA [auth U]SCOP2B SuperfamilyJAB1/MPN domain-like 8053272 3001105 SCOP2B (2022-06-29)
AA [auth R]SCOP2B SuperfamilyTPR-like 8057042 3001345 SCOP2B (2022-06-29)
AA [auth R]SCOP2B SuperfamilyWinged helix DNA-binding domain 8057044 3000034 SCOP2B (2022-06-29)
PA [auth g]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079169 3000131 SCOP2B (2022-06-29)
P [auth G]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079169 3000131 SCOP2B (2022-06-29)
OA [auth f]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064066 3000131 SCOP2B (2022-06-29)
O [auth F]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064066 3000131 SCOP2B (2022-06-29)
NA [auth e]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064026 3000131 SCOP2B (2022-06-29)
N [auth E]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064026 3000131 SCOP2B (2022-06-29)
MA [auth d]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064012 3000131 SCOP2B (2022-06-29)
M [auth D]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064012 3000131 SCOP2B (2022-06-29)
L [auth C]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064020 3000131 SCOP2B (2022-06-29)
LA [auth c]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064020 3000131 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
KA [auth b]RRM_1e3jcpb1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
K [auth B]RRM_1e3jcpB1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
J [auth A]RRM_1e3jcpA1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
JA [auth a]RRM_1e3jcpa1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
G [auth 7]RRM_1e3jcp71 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
UA [auth l]RRM_1e3jcpl1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
TA [auth k]RRM_1e3jcpk1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
F [auth 6]RRM_1e3jcp61 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
SA [auth j]RRM_1e3jcpj1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
E [auth 5]RRM_1e3jcp51 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
RA [auth i]RRM_1e3jcpi1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
D [auth 4]RRM_1e3jcp41 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
IA [auth Z]RRM_1e3jcpZ1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
GA [auth X]RRM_1e3jcpX1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
FA [auth W]RRM_1e3jcpW1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
C [auth 3]RRM_1e3jcp31 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
QA [auth h]RRM_1e3jcph1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
EA [auth V]AP_endonuc_2e3jcpV1 A: alpha bundlesX: Cytochrome P450H: Cytochrome P450T: Cytochrome P450F: AP_endonuc_2ECOD (develop294)
DA [auth U]RRM_1e3jcpU1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
CA [auth T]RRM_1e3jcpT1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
BA [auth S]Ion_transe3jcpS1 A: alpha bundlesX: SMI1/KNR4-likeH: SMI1/KNR4-likeT: SMI1/KNR4-likeF: Ion_transECOD (develop294)
AA [auth R]RRM_1e3jcpR1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
Z [auth Q]RRM_1e3jcpQ1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
Y [auth P]RRM_1e3jcpP1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
X [auth O]RRM_1e3jcpO1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
W [auth N]RRM_1e3jcpN1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
V [auth M]NPC1_MLDe3jcpM1 A: alpha bundlesX: HAD domain-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: NPC1_MLDECOD (develop294)
B [auth 2]RRM_1e3jcp21 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
I [auth 9]RRM_1e3jcp91 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
U [auth L]RRM_1e3jcpL1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
T [auth K]ANAPC4e3jcpK1 A: alpha bundlesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: ANAPC4ECOD (develop294)
S [auth J]ANAPC4e3jcpJ1 A: alpha bundlesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: ANAPC4ECOD (develop294)
R [auth I]RRM_1e3jcpI1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
PA [auth g]RRM_1e3jcpg1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
P [auth G]RRM_1e3jcpG1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
OA [auth f]RRM_1e3jcpf1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
O [auth F]RRM_1e3jcpF1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
NA [auth e]RRM_1e3jcpe1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
N [auth E]RRM_1e3jcpE1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
MA [auth d]RRM_1e3jcpd1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
M [auth D]RRM_1e3jcpD1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
L [auth C]RRM_1e3jcpC1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
LA [auth c]RRM_1e3jcpc1 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
H [auth 8]RRM_1e3jcp81 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)
A [auth 1]RRM_1e3jcp11 A: alpha bundlesX: beta-propeller-likeH: beta-propellerT: 9-bladedF: RRM_1ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth B],
KA [auth b]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
K [auth B],
KA [auth b]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
J [auth A],
JA [auth a]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
J [auth A],
JA [auth a]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
F [auth 6],
TA [auth k]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
E [auth 5],
SA [auth j]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
D [auth 4],
RA [auth i]		PF12465Proteasome beta subunits C terminal (Pr_beta_C)Proteasome beta subunits C terminal- Family
IA [auth Z]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
GA [auth X]PF04683Proteasome complex subunit Rpn13, Pru domain (Rpn13_ADRM1_Pru)Proteasome complex subunit Rpn13, Pru domainThis family was thought originally to be involved in cell-adhesion [1,2], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of ...This family was thought originally to be involved in cell-adhesion [1,2], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain [4]. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold [5]. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 [5].
Domain
FA [auth W]PF13519von Willebrand factor type A domain (VWA_2)von Willebrand factor type A domainDomain
C [auth 3],
QA [auth h]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
DA [auth U]PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family
CA [auth T]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
BA [auth S]PF25573PSMD3-like, N-terminal TPR repeats (TPR_PSMD3_N)PSMD3-like, N-terminal TPR repeats- Repeat
BA [auth S]PF08375Proteasome regulatory subunit C-terminal (Rpn3_C)Proteasome regulatory subunit C-terminal- Family
BA [auth S]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
AA [auth R]PF2115426S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix (RPN7_PSMD6_C)26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helixRPN7/PSDM6 are regulatory subunits from the 26S proteasome. This entry represents the C-terminal helix. Domain
AA [auth R]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
AA [auth R]PF1060226S proteasome subunit RPN7 (RPN7)26S proteasome subunit RPN7- Repeat
Z [auth Q]PF1805526S proteasome regulatory subunit RPN6 N-terminal domain (RPN6_N)26S proteasome regulatory subunit RPN6 N-terminal domainThis is the N-terminal domain found in RPN6 proteins (26S proteasome regulatory subunit). The 26S proteasome holocomplex consists of a 28-subunit barrel-shaped core particle (CP) in the center capped at the top and bottom by 19-subunit regulatory par ...This is the N-terminal domain found in RPN6 proteins (26S proteasome regulatory subunit). The 26S proteasome holocomplex consists of a 28-subunit barrel-shaped core particle (CP) in the center capped at the top and bottom by 19-subunit regulatory particles (RPs). The CP forms the catalytic chamber and the RP is formed from two subcomplexes known as the lid and the base [1]. The lid comprises nine Rpn subunits in yeast (Rpn3/5/6/7/8/9/11/12/15) and the base comprises three Rpn subunits (Rpn1/2/13) and six ATPases (Rpt1-6) [2]. Phosphorylation of Rpn6 enhances proteasome ATPase activity and promotes the formation of doubly capped (30S) proteasome, hence accelerating the degradation of short-lived proteins [3].
Domain
Z [auth Q]PF1850326S proteasome subunit RPN6 C-terminal helix domain (RPN6_C_helix)26S proteasome subunit RPN6 C-terminal helix domainThis is the C-terminal helix domain found in RPN6, a component of the 26S proteasome. The C-terminal helices are essential for lid assembly [1, 2]. Domain
Z [auth Q]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
Y [auth P]PF1809826S proteasome regulatory subunit RPN5 C-terminal domain (RPN5_C)26S proteasome regulatory subunit RPN5 C-terminal domainThis is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degrada ...This is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degradation machine: the lid, the base, and the core. The helices found at the C terminus of each lid subunit form a helical bundle that directs the ordered self-assembly of the lid subcomplex. This domain which comprises the tail of RPN5 along with the tail of Rpn9, are important for Rpn12 binding to the lid [1].
Domain
Y [auth P]PF22241PSMD12/CSN4, N-terminal (PSMD12-CSN4_N)PSMD12/CSN4, N-terminal- Repeat
Y [auth P]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
X [auth O]PF18261Rpn9 C-terminal helix (Rpn9_C)Rpn9 C-terminal helix- Family
X [auth O]PF22037PSD13 N-terminal repeats (PSD13_N)PSD13 N-terminal repeats- Repeat
X [auth O]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
W [auth N]PF13646HEAT repeats (HEAT_2)HEAT repeats- Repeat
W [auth N]PF1800426S proteasome regulatory subunit RPN2 C-terminal domain (RPN2_C)26S proteasome regulatory subunit RPN2 C-terminal domainThis is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating inter ...This is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating interactions with the ubiquitin-binding subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were shown to be equally effective at binding Rpn13. Multiple sequence alignments indicate that Rpn2 orthologs are highly conserved in this C-terminal region and share characteristic acidic, aromatic, and proline residues, suggesting a common function. In the structure of Rpn2 from S. cerevisiae , this region is exposed and disordered, and is thus accessible for associating with Rpn13. The Rpn2 binding surface of human Rpn13 has been mapped by nuclear magnetic resonance titration to one surface of its Pru domain [1].
Domain
W [auth N]PF2150526S proteasome subunit RPN2, N-terminal domain (RPN2_N)26S proteasome subunit RPN2, N-terminal domain- Repeat
W [auth N]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
V [auth M]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
V [auth M]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
V [auth M]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
B [auth 2],
I [auth 9]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
U [auth L]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
U [auth L]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
U [auth L]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
T [auth K]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
T [auth K]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
T [auth K]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
S [auth J]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
S [auth J]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
S [auth J]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
S [auth J]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
R [auth I]PF12465Proteasome beta subunits C terminal (Pr_beta_C)Proteasome beta subunits C terminal- Family
R [auth I]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
R [auth I]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
R [auth I]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
Q [auth H]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
Q [auth H]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
Q [auth H]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
P [auth G],
PA [auth g]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
P [auth G],
PA [auth g]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
O [auth F],
OA [auth f]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
O [auth F],
OA [auth f]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
N [auth E],
NA [auth e]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
M [auth D],
MA [auth d]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
M [auth D],
MA [auth d]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
L [auth C],
LA [auth c]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
L [auth C],
LA [auth c]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
A [auth 1],
H [auth 8]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
K [auth B],
KA [auth b]		Proteasome subunit alpha type-2-
J [auth A],
JA [auth a]		Proteasome subunit alpha type-1-
G [auth 7],
UA [auth l]		Proteasome subunit beta type-5
F [auth 6],
TA [auth k]		Proteasome subunit beta type-4
E [auth 5],
SA [auth j]		Proteasome subunit beta type-3
D [auth 4],
RA [auth i]		Proteasome subunit beta type-2
IA [auth Z]26S proteasome regulatory subunit RPN1
HA [auth Y]26S proteasome complex subunit SEM1
GA [auth X]26S proteasome regulatory subunit RPN13
FA [auth W]26S proteasome regulatory subunit RPN10
C [auth 3],
QA [auth h]		Proteasome subunit beta type-1
EA [auth V]Ubiquitin carboxyl-terminal hydrolase RPN11
DA [auth U]26S proteasome regulatory subunit RPN8
CA [auth T]26S proteasome regulatory subunit RPN12-
BA [auth S]26S proteasome regulatory subunit RPN3
AA [auth R]26S proteasome regulatory subunit RPN7
Z [auth Q]26S proteasome regulatory subunit RPN6
Y [auth P]26S proteasome regulatory subunit RPN5-
X [auth O]26S proteasome regulatory subunit RPN9
W [auth N]26S proteasome regulatory subunit RPN2
V [auth M]26S protease regulatory subunit 6A
B [auth 2],
I [auth 9]		Proteasome subunit beta type-7-
U [auth L]26S protease subunit RPT4
T [auth K]26S protease regulatory subunit 6B homolog
S [auth J]26S protease regulatory subunit 8 homolog
R [auth I]26S protease regulatory subunit 4 homolog
Q [auth H]26S protease regulatory subunit 7 homolog
P [auth G],
PA [auth g]		Probable proteasome subunit alpha type-7
O [auth F],
OA [auth f]		Proteasome subunit alpha type-6-
N [auth E],
NA [auth e]		Proteasome subunit alpha type-5-
M [auth D],
MA [auth d]		Proteasome subunit alpha type-4-
L [auth C],
LA [auth c]		Proteasome subunit alpha type-3-
A [auth 1],
H [auth 8]		Proteasome subunit beta type-6-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
K [auth B],
KA [auth b]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
K [auth B],
KA [auth b]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
K [auth B],
KA [auth b]		IPR050115Proteasome subunit alphaFamily
K [auth B],
KA [auth b]		IPR023332Proteasome alpha-type subunitFamily
K [auth B],
KA [auth b]		IPR001353Proteasome, subunit alpha/betaFamily
J [auth A],
JA [auth a]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
J [auth A],
JA [auth a]		IPR034642Proteasome subunit alpha6Family
J [auth A],
JA [auth a]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
J [auth A],
JA [auth a]		IPR050115Proteasome subunit alphaFamily
J [auth A],
JA [auth a]		IPR023332Proteasome alpha-type subunitFamily
J [auth A],
JA [auth a]		IPR001353Proteasome, subunit alpha/betaFamily
G [auth 7],
UA [auth l]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
G [auth 7],
UA [auth l]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
G [auth 7],
UA [auth l]		IPR023333Proteasome B-type subunitFamily
G [auth 7],
UA [auth l]		IPR001353Proteasome, subunit alpha/betaFamily
G [auth 7],
UA [auth l]		IPR000243Peptidase T1A, proteasome beta-subunitFamily
F [auth 6],
TA [auth k]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
F [auth 6],
TA [auth k]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
F [auth 6],
TA [auth k]		IPR023333Proteasome B-type subunitFamily
F [auth 6],
TA [auth k]		IPR001353Proteasome, subunit alpha/betaFamily
F [auth 6],
TA [auth k]		IPR035206Proteasome subunit beta 2Family
E [auth 5],
SA [auth j]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
E [auth 5],
SA [auth j]		IPR023333Proteasome B-type subunitFamily
E [auth 5],
SA [auth j]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
E [auth 5],
SA [auth j]		IPR001353Proteasome, subunit alpha/betaFamily
E [auth 5],
SA [auth j]		IPR033811Proteasome beta 3 subunitFamily
D [auth 4],
RA [auth i]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
D [auth 4],
RA [auth i]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
D [auth 4],
RA [auth i]		IPR024689Proteasome beta subunit, C-terminalDomain
D [auth 4],
RA [auth i]		IPR023333Proteasome B-type subunitFamily
D [auth 4],
RA [auth i]		IPR001353Proteasome, subunit alpha/betaFamily
D [auth 4],
RA [auth i]		IPR000243Peptidase T1A, proteasome beta-subunitFamily
IA [auth Z]IPR04143326S proteasome non-ATPase regulatory subunit RPN1, C-terminalDomain
IA [auth Z]IPR016024Armadillo-type foldHomologous Superfamily
IA [auth Z]IPR002015Proteasome/cyclosome repeatRepeat
IA [auth Z]IPR01664326S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunitFamily
IA [auth Z]IPR011989Armadillo-like helicalHomologous Superfamily
IA [auth Z]IPR040892RPN1, N-terminalDomain
HA [auth Y]IPR007834DSS1/SEM1Family
GA [auth X]IPR044868Rpn13/ADRM1, Pru domainDomain
GA [auth X]IPR006773Proteasomal ubiquitin receptor Rpn13/ADRM1Family
GA [auth X]IPR038633Proteasomal ubiquitin receptor Rpn13/ADRM1, Pru domain superfamilyHomologous Superfamily
FA [auth W]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
FA [auth W]IPR02704026S proteasome non-ATPase regulatory subunit 4Family
FA [auth W]IPR002035von Willebrand factor, type ADomain
FA [auth W]IPR003903Ubiquitin interacting motifConserved Site
C [auth 3],
QA [auth h]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
C [auth 3],
QA [auth h]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
C [auth 3],
QA [auth h]		IPR023333Proteasome B-type subunitFamily
C [auth 3],
QA [auth h]		IPR001353Proteasome, subunit alpha/betaFamily
C [auth 3],
QA [auth h]		IPR000243Peptidase T1A, proteasome beta-subunitFamily
EA [auth V]IPR050242JAMM/MPN+ metalloenzymes, peptidase M67AFamily
EA [auth V]IPR037518MPN domainDomain
EA [auth V]IPR05626326S proteasome regulatory subunit RPN11, C-terminal domainDomain
EA [auth V]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
DA [auth U]IPR024969EIF3F/CSN6-like, C-terminalDomain
DA [auth U]IPR037518MPN domainDomain
DA [auth U]IPR03385826S Proteasome non-ATPase regulatory subunit 7/8Family
DA [auth U]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
CA [auth T]IPR000717Proteasome component (PCI) domainDomain
CA [auth T]IPR00674626S proteasome non-ATPase regulatory subunit Rpn12Family
CA [auth T]IPR033464CSN8/PSMD8/EIF3KDomain
BA [auth S]IPR000717Proteasome component (PCI) domainDomain
BA [auth S]IPR01358626S proteasome non-ATPase regulatory subunit 3, C-terminalDomain
BA [auth S]IPR05798526S proteasome non-ATPase regulatory subunit 3, N-terminal TPR repeatsDomain
BA [auth S]IPR050756COP9 signalosome complex subunit 3Family
BA [auth S]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
AA [auth R]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
AA [auth R]IPR01958526S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1Family
AA [auth R]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
AA [auth R]IPR04954926S proteasome regulatory subunit RPN7/PSMD6, C-terminal helixDomain
AA [auth R]IPR000717Proteasome component (PCI) domainDomain
AA [auth R]IPR04513526S proteasome regulatory subunit Rpn7, N-terminalDomain
AA [auth R]IPR019734Tetratricopeptide repeatRepeat
Z [auth Q]IPR05087126S Proteasome and COP9 Signalosome ComponentsFamily
Z [auth Q]IPR0407806S proteasome subunit Rpn6, C-terminal helix domainDomain
Z [auth Q]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
Z [auth Q]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
Z [auth Q]IPR04077326S proteasome regulatory subunit Rpn6, N-terminalDomain
Z [auth Q]IPR000717Proteasome component (PCI) domainDomain
Y [auth P]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
Y [auth P]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
Y [auth P]IPR000717Proteasome component (PCI) domainDomain
Y [auth P]IPR04089626S proteasome regulatory subunit RPN5, C-terminal domainDomain
Y [auth P]IPR04013426S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4Family
Y [auth P]IPR054559PSMD12/CSN4-like, N-terminalDomain
X [auth O]IPR054179PSD13, N-terminalDomain
X [auth O]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
X [auth O]IPR03529826S Proteasome non-ATPase regulatory subunit 13Family
X [auth O]IPR000717Proteasome component (PCI) domainDomain
X [auth O]IPR040798Rpn9, C-terminal helixDomain
W [auth N]IPR04062326S proteasome regulatory subunit RPN2, C-terminalDomain
W [auth N]IPR016024Armadillo-type foldHomologous Superfamily
W [auth N]IPR002015Proteasome/cyclosome repeatRepeat
W [auth N]IPR011989Armadillo-like helicalHomologous Superfamily
W [auth N]IPR04857026S proteasome non-ATPase regulatory subunit 1/RPN2, N-terminal domainDomain
W [auth N]IPR01664226S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunitFamily
V [auth M]IPR05022126S Proteasome Regulatory ATPaseFamily
V [auth M]IPR041569AAA ATPase, AAA+ lid domainDomain
V [auth M]IPR032501Proteasomal ATPase, second OB domainDomain
V [auth M]IPR003960ATPase, AAA-type, conserved siteConserved Site
V [auth M]IPR003593AAA+ ATPase domainDomain
V [auth M]IPR003959ATPase, AAA-type, coreDomain
V [auth M]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
V [auth M]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 2],
I [auth 9]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
B [auth 2],
I [auth 9]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
B [auth 2],
I [auth 9]		IPR023333Proteasome B-type subunitFamily
B [auth 2],
I [auth 9]		IPR016295Proteasome subunit beta 4Family
B [auth 2],
I [auth 9]		IPR001353Proteasome, subunit alpha/betaFamily
U [auth L]IPR05022126S Proteasome Regulatory ATPaseFamily
U [auth L]IPR041569AAA ATPase, AAA+ lid domainDomain
U [auth L]IPR032501Proteasomal ATPase, second OB domainDomain
U [auth L]IPR003960ATPase, AAA-type, conserved siteConserved Site
U [auth L]IPR003593AAA+ ATPase domainDomain
U [auth L]IPR003959ATPase, AAA-type, coreDomain
U [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
U [auth L]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
T [auth K]IPR05022126S Proteasome Regulatory ATPaseFamily
T [auth K]IPR032501Proteasomal ATPase, second OB domainDomain
T [auth K]IPR003960ATPase, AAA-type, conserved siteConserved Site
T [auth K]IPR003593AAA+ ATPase domainDomain
T [auth K]IPR003959ATPase, AAA-type, coreDomain
T [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth K]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
S [auth J]IPR05022126S Proteasome Regulatory ATPaseFamily
S [auth J]IPR041569AAA ATPase, AAA+ lid domainDomain
S [auth J]IPR032501Proteasomal ATPase, second OB domainDomain
S [auth J]IPR003960ATPase, AAA-type, conserved siteConserved Site
S [auth J]IPR003593AAA+ ATPase domainDomain
S [auth J]IPR003959ATPase, AAA-type, coreDomain
S [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth J]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
R [auth I]IPR05022126S Proteasome Regulatory ATPaseFamily
R [auth I]IPR041569AAA ATPase, AAA+ lid domainDomain
R [auth I]IPR032501Proteasomal ATPase, second OB domainDomain
R [auth I]IPR003960ATPase, AAA-type, conserved siteConserved Site
R [auth I]IPR003593AAA+ ATPase domainDomain
R [auth I]IPR003959ATPase, AAA-type, coreDomain
R [auth I]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
R [auth I]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Q [auth H]IPR04872326S proteasome regulatory subunit 7-like, OB domainDomain
Q [auth H]IPR05022126S Proteasome Regulatory ATPaseFamily
Q [auth H]IPR041569AAA ATPase, AAA+ lid domainDomain
Q [auth H]IPR003960ATPase, AAA-type, conserved siteConserved Site
Q [auth H]IPR003593AAA+ ATPase domainDomain
Q [auth H]IPR003959ATPase, AAA-type, coreDomain
Q [auth H]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth H]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
P [auth G],
PA [auth g]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
P [auth G],
PA [auth g]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
P [auth G],
PA [auth g]		IPR050115Proteasome subunit alphaFamily
P [auth G],
PA [auth g]		IPR023332Proteasome alpha-type subunitFamily
P [auth G],
PA [auth g]		IPR001353Proteasome, subunit alpha/betaFamily
O [auth F],
OA [auth f]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
O [auth F],
OA [auth f]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
O [auth F],
OA [auth f]		IPR050115Proteasome subunit alphaFamily
O [auth F],
OA [auth f]		IPR023332Proteasome alpha-type subunitFamily
O [auth F],
OA [auth f]		IPR001353Proteasome, subunit alpha/betaFamily
N [auth E],
NA [auth e]		IPR033812Proteasome subunit alpha5Family
N [auth E],
NA [auth e]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
N [auth E],
NA [auth e]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
N [auth E],
NA [auth e]		IPR050115Proteasome subunit alphaFamily
N [auth E],
NA [auth e]		IPR023332Proteasome alpha-type subunitFamily
N [auth E],
NA [auth e]		IPR001353Proteasome, subunit alpha/betaFamily
M [auth D],
MA [auth d]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
M [auth D],
MA [auth d]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
M [auth D],
MA [auth d]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
M [auth D],
MA [auth d]		IPR050115Proteasome subunit alphaFamily
M [auth D],
MA [auth d]		IPR023332Proteasome alpha-type subunitFamily
M [auth D],
MA [auth d]		IPR001353Proteasome, subunit alpha/betaFamily
L [auth C],
LA [auth c]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
L [auth C],
LA [auth c]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
L [auth C],
LA [auth c]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
L [auth C],
LA [auth c]		IPR050115Proteasome subunit alphaFamily
L [auth C],
LA [auth c]		IPR023332Proteasome alpha-type subunitFamily
L [auth C],
LA [auth c]		IPR001353Proteasome, subunit alpha/betaFamily
A [auth 1],
H [auth 8]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
A [auth 1],
H [auth 8]		IPR023333Proteasome B-type subunitFamily
A [auth 1],
H [auth 8]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
A [auth 1],
H [auth 8]		IPR001353Proteasome, subunit alpha/betaFamily