3JB6 | pdb_00003jb6

In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EUF08096	e3jb6A3	A: alpha bundles	X: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	T: helical bundle domain in reverse transcriptase-like polymerases	F: EUF08096	ECOD (1.6)
A	EUF08251	e3jb6A4	A: alpha complex topology	X: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology)	H: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology)	T: C-terminal additional helical subdomain in reovirus polymerase lambda3	F: EUF08251	ECOD (1.6)
A	EUF08252	e3jb6A1	A: alpha complex topology	X: N-terminal additional helical subdomain in reovirus polymerase lambda3 (From Homology)	H: N-terminal additional helical subdomain in reovirus polymerase lambda3	T: N-terminal additional helical subdomain in reovirus polymerase lambda3	F: EUF08252	ECOD (1.6)
A	EUF08358	e3jb6A2	A: a+b two layers	X: Alpha-beta plaits	H: Adenylyl and guanylyl cyclase catalytic domain-like	T: Adenylyl and guanylyl cyclase catalytic domain-like	F: EUF08358	ECOD (1.6)
B	AAA_33_like	e3jb6B1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA_33_like	ECOD (1.6)
B	EUF08661	e3jb6B2	A: mixed a+b and a/b	X: Viral structural protein 4 N-terminal domain (From Topology)	H: Viral structural protein 4 N-terminal domain (From Topology)	T: Viral structural protein 4 N-terminal domain	F: EUF08661	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	RNA-dependent RNA polymerase	RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA binding binding nucleic acid binding	viral genome replication viral process viral life cycle	-
B	Viral structural protein 4	-	-	-
C, D	VP1 CSP	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR054006	RNA-directed RNA polymerase, N-terminal	Domain
A	IPR054002	RNA-directed RNA polymerase, C-terminal	Domain
A	IPR007097	RNA-directed RNA polymerase, reovirus	Domain
C, D	IPR049422	Capsid protein VP1/VP3, C-terminal	Domain
C, D	IPR049421	Inner capsid protein VP1, small protrusion domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.