3JB2 | pdb_00003jb2

Atomic model of cytoplasmic polyhedrosis virus with SAM and GTP

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EUF08555	e3jb2A2	A: a+b complex topology	X: Reovirus guanylyltransferase (GTase) (From Topology)	H: Reovirus guanylyltransferase (GTase) (From Topology)	T: Reovirus guanylyltransferase (GTase)	F: EUF08555	ECOD (1.6)
A	EUF08556	e3jb2A3	A: a+b complex topology	X: Reovirus turret protein bridge domain (From Topology)	H: Reovirus turret protein bridge domain (From Topology)	T: Reovirus turret protein bridge domain	F: EUF08556	ECOD (1.6)
A	EUF08594	e3jb2A1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: EUF08594	ECOD (1.6)
A	EUF08595	e3jb2A4	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: EUF08595	ECOD (1.6)
B	EUF08564	e3jb2B1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: EUF08564	ECOD (1.6)
B	EUF08644	e3jb2B2	A: a/b three-layered sandwiches	X: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein (From Topology)	H: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein (From Topology)	T: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein	F: EUF08644	ECOD (1.6)
C	EUF08564	e3jb2C1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: EUF08564	ECOD (1.6)
C	EUF08644	e3jb2C2	A: a/b three-layered sandwiches	X: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein (From Topology)	H: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein (From Topology)	T: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein	F: EUF08644	ECOD (1.6)
D	EUF07968	e3jb2D1	A: alpha arrays	X: Viral structural protein 5 (From Topology)	H: Viral structural protein 5 (From Topology)	T: Viral structural protein 5	F: EUF07968	ECOD (1.6)
E	EUF07968	e3jb2E1	A: alpha arrays	X: Viral structural protein 5 (From Topology)	H: Viral structural protein 5 (From Topology)	T: Viral structural protein 5	F: EUF07968	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Structural protein VP3	-	-	-
B, C	Capsid protein VP1	-	-	viral capsid icosahedral viral capsid virion component viral inner capsid T=2 icosahedral viral capsid
D, E	Viral structural protein 5	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR048605	Reovirus VP3 protein, bridge domain	Domain
A	IPR048606	Reovirus VP3 protein, Methyltransferase domain 2	Domain
A	IPR048607	Reovirus VP3 protein, Methyltransferase domain 1	Domain
A	IPR048608	Reovirus VP3 protein, guanylyltransferase	Domain
B, C	IPR049422	Capsid protein VP1/VP3, C-terminal	Domain
B, C	IPR049421	Inner capsid protein VP1, small protrusion domain	Domain
D, E	IPR049423	Viral structural protein 5	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.