Yeast V-ATPase state 2
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| L [auth P] | SCOP2B Superfamily | ARM repeat-like | 8033221 | 3000116 | SCOP2B (2022-06-29) |
| N [auth O] | SCOP2B Superfamily | Vacuolar ATP synthase subunit C | 8042806 | 3001744 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| M [auth b] | V_ATPase_I | e3j9ub1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: V_ATPase_I | ECOD (v294.1) |
| M [auth b] | MG2 | e3j9ub2 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: MG2 | ECOD (v294.1) |
| L [auth P] | GKRP_SIS_2 | e3j9uP1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| R [auth I] | GKRP_SIS_2 | e3j9uI1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| P [auth G] | GKRP_SIS_2 | e3j9uG1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| K | GKRP_SIS_2 | e3j9uK1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| Q [auth J] | GKRP_SIS_2 | e3j9uJ1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| O [auth H] | GKRP_SIS_2 | e3j9uH1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| J [auth L] | GKRP_SIS_2 | e3j9uL1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| I [auth Q] | PRORP | e3j9uQ1 | A: a/b three-layered sandwiches | X: OB-fold | H: Phage tail fiber protein trimerization domain | T: Phage tail fiber protein trimerization domain | F: PRORP | ECOD (v294.1) |
| H [auth B] | GKRP_SIS_2 | e3j9uB1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| F | GKRP_SIS_2 | e3j9uF1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| D | GKRP_SIS_2 | e3j9uD1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| G [auth A] | U6-snRNA_bdg | e3j9uA1 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: U6-snRNA_bdg | ECOD (v294.1) |
| E | U6-snRNA_bdg | e3j9uE1 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: U6-snRNA_bdg | ECOD (v294.1) |
| C | U6-snRNA_bdg | e3j9uC1 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: U6-snRNA_bdg | ECOD (v294.1) |
| B [auth N] | GKRP_SIS_2 | e3j9uN1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| Z [auth T] | GKRP_SIS_2 | e3j9uT1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| Y | GKRP_SIS_2 | e3j9uY1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| X [auth S] | GKRP_SIS_2 | e3j9uS1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| W [auth Z] | GKRP_SIS_2 | e3j9uZ1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| V [auth R] | GKRP_SIS_2 | e3j9uR1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| U [auth a] | GKRP_SIS_2 | e3j9ua1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| T [auth X] | GKRP_SIS_2 | e3j9uX1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| S [auth U] | GKRP_SIS_2 | e3j9uU1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| BA [auth W] | GKRP_SIS_2 | e3j9uW1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| AA [auth V] | GKRP_SIS_2 | e3j9uV1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
| N [auth O] | Lactamase_B_2 | e3j9uO1 | A: a/b three-layered sandwiches | X: Cytidine deaminase-like | H: Cytidine deaminase-like | T: Cytidine deaminase-like | F: Lactamase_B_2 | ECOD (v294.1) |
| A [auth M] | GKRP_SIS_2 | e3j9uM1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: GKRP_SIS_2 | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| L [auth P] | PF11698 | V-ATPase subunit H (V-ATPase_H_C) | V-ATPase subunit H | - | Repeat |
| L [auth P] | PF03224 | V-ATPase subunit H (V-ATPase_H_N) | V-ATPase subunit H | - | Repeat |
| K, P [auth G], R [auth I] | PF01991 | ATP synthase (E/31 kDa) subunit (vATP-synt_E) | ATP synthase (E/31 kDa) subunit | - | Family |
| J [auth L], O [auth H], Q [auth J] | PF03179 | Vacuolar (H+)-ATPase G subunit (V-ATPase_G) | Vacuolar (H+)-ATPase G subunit | - | Coiled-coil |
| I [auth Q] | PF01992 | ATP synthase (C/AC39) subunit (vATP-synt_AC39) | ATP synthase (C/AC39) subunit | - | Family |
| D, F, H [auth B] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
| D, F, H [auth B] | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
| D, F, H [auth B] | PF01496 | V-type ATPase 116kDa subunit family (V_ATPase_I) | V-type ATPase 116kDa subunit family | - | Family |
| D, F, H [auth B] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
| C, E, G [auth A] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
| C, E, G [auth A] | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
| C, E, G [auth A] | PF16886 | ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn) | ATPsynthase alpha/beta subunit barrel-sandwich domain | This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ... | Domain |
| C, E, G [auth A] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
| C, E, G [auth A] | PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain |
| B [auth N] | PF01990 | ATP synthase (F/14-kDa) subunit (ATP-synt_F) | ATP synthase (F/14-kDa) subunit | - | Family |
| PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain | |
| N [auth O] | PF03223 | V-ATPase subunit C (V-ATPase_C) | V-ATPase subunit C | - | Family |
| A [auth M] | PF01813 | ATP synthase subunit D (ATP-synt_D) | ATP synthase subunit D | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Proton or Sodium translocating F-type, V-type and A-type ATPases | V-type and F-type ATPases |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Vacuolar ATPase (V-ATPase) | Complete V-ATPase by cryo-EM, state 1 |














