3J9O | pdb_00003j9o

CryoEM structure of a type VI secretion system


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
KT6SS_VipAe3j9oK1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
IT6SS_VipAe3j9oI1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
GT6SS_VipAe3j9oG1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
ET6SS_VipAe3j9oE1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
CT6SS_VipAe3j9oC1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
LVipB_Ce3j9oL1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
LVipB_Ne3j9oL2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
JVipB_Ce3j9oJ1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
JVipB_Ne3j9oJ2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
HVipB_Ce3j9oH1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
HVipB_Ne3j9oH2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
FVipB_Ce3j9oF1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
FVipB_Ne3j9oF2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
DVipB_Ce3j9oD1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
DVipB_Ne3j9oD2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
BVipB_Ce3j9oB1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, C, E, G, I
IPR008312Type VI secretion system sheath protein TssB1Family
B, D, F, H, J
IPR010269Type VI secretion system TssC-likeFamily
B, D, F, H, J
IPR044032TssC1, C-terminalDomain
B, D, F, H, J
IPR044031TssC1, N-terminalDomain